PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.005G124800.1

Common Name

PHAVU_005G124800g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

C2H2

Protein Properties

Length: 309aa MW: 35166.8 Da PI: 7.9633

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.005G124800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.8	1.9e-05	145	164	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 + C++C+k+F+r n++ H+ Phvul.005G124800.1 145 FACSICSKTFNRYNNMQMHM 164 78*****************9 PP
2	zf-C2H2	14.4	0.00011	229	251	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +C+ksF k + ++H +++ Phvul.005G124800.1 229 FMCRKCSKSFAVKGDWRTHEKNC 251 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.33E-6	114	168	No hit	No description
SMART	SM00355	0.17	145	167	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.2E-5	145	164	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.45	145	172	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	147	167	IPR007087	Zinc finger, C2H2
SMART	SM00355	190	192	224	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	6.72E-6	215	249	No hit	No description
Gene3D	G3DSA:3.30.160.60	3.5E-5	215	249	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	56	229	249	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
MSFRECNVEN KNLCLQTPTF IEWLEPSSSL TGSISPPPSS LSHQHDQLSQ ETIQFLPFKE 60 DHGVKRDGLE VKEEKVEQVT VALHIGLPHT GDPDPDEHDG SDEKKVFHVK EEEPLKKSFQ 120 GCSFNQERRF WIPTPAQILV GPMQFACSIC SKTFNRYNNM QMHMWGHGSE FRKGPDSLKG 180 TQPAAMLRLP CYCCAQGCKN NINHPRAKPL KDFRTLQTHY KRKHGAKPFM CRKCSKSFAV 240 KGDWRTHEKN CGKLWYCTCG SDFKHKRSLK DHIRSFGKGH SPHPSHEGFV EDEKECVTGS 300 DEDEVAHT*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator. {ECO:0000305\|PubMed:20541552}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.005G124800.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015040	0.0	AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007150080.1	0.0	hypothetical protein PHAVU_005G124800g
Swissprot	Q9SGD1	1e-117	ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBL	V7BVS6	0.0	V7BVS6_PHAVU; Uncharacterized protein
STRING	XP_007150080.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF170	34	289

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08290.1	1e-114	WIP domain protein 3

Link Out ? help Back to Top
Phytozome	Phvul.005G124800.1
Entrez Gene	18630886

Publications ? help Back to Top
Zhou X,Meier I Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins. Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5 [PMID:25074908]