PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.005G138300.1
Common NamePHAVU_005G138300g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family AP2
Protein Properties Length: 476aa    MW: 52476.4 Da    PI: 7.9505
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.005G138300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.33.4e-17136185155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Phvul.005G138300.1 136 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 185
                         78*******************......55************************998 PP
2AP241.24.1e-13228278155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ k +g
  Phvul.005G138300.1 228 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAIKCNG 278
                         89********.7******5553..2.26**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541718.5E-16136193IPR016177DNA-binding domain
PfamPF008472.2E-9136185IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.0E-17137193IPR001471AP2/ERF domain
PROSITE profilePS5103217.82137193IPR001471AP2/ERF domain
SMARTSM003801.8E-31137199IPR001471AP2/ERF domain
CDDcd000182.49E-11137192No hitNo description
SuperFamilySSF541717.85E-17228287IPR016177DNA-binding domain
CDDcd000185.82E-26228288No hitNo description
PfamPF008471.2E-8228278IPR001471AP2/ERF domain
PROSITE profilePS5103215.527229286IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.5E-16229286IPR001471AP2/ERF domain
SMARTSM003801.9E-32229292IPR001471AP2/ERF domain
PRINTSPR003675.0E-6230241IPR001471AP2/ERF domain
PRINTSPR003675.0E-6268288IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MLDLNLNADS TQSHDSVMLL DKFPEASSGT SNSSVVNAEG SSNEDSCSTR AGGVFTFNFG  60
ILKVEGAEDV VVAATKELFP VSADNWQGQS STSSFQARKS LMDLSLDRQN GEVKVVQVQQ  120
QSQVKKSRRG PRSRSSQYRG VTFYRRTGRW ESHIWDCGKQ VYLGGFDTAH AAARAYDRAA  180
IKFRGLDADI NFNLVDYEED LKQMKNLSKE EFVHILRRHS TGFSRGSSKY RGVTLHKCGR  240
WEARMGQFLG KKYIYLGLFD SEVEAARAYD KAAIKCNGRE AVTNFEPSAY ESEMKPEAIN  300
EGGSHDLDLN LGIATPGHGP KENLGHLQFQ QVPYSTHPGR ISRMETNVNS VIGDPSLKRH  360
AVTEERPSEW NTSYSTFFPN LERAERIGID PSKGVPNWAW QTHSQVSATP VPPFSTAASS  420
GFSISATFPP NAIFPTKSLN SIPQNLCFTS ASAPGSNAPQ FYYEVKPLQT PSQPI*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.005G138300.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007150248.10.0hypothetical protein PHAVU_005G138300g
SwissprotQ9SK031e-110RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLV7BW600.0V7BW60_PHAVU; Uncharacterized protein
STRINGXP_007150248.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28073476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-122related to AP2.7