PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.005G141500.1
Common NamePHAVU_005G141500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 178aa    MW: 19706.8 Da    PI: 9.053
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.005G141500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.00054668123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        +kC+ C+++Fs+   L  H  +H
  Phvul.005G141500.1 46 FKCKTCNRRFSSFQALGGHRASH 68
                        89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0864668IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.9E-646119No hitNo description
PROSITE profilePS5015710.2844673IPR007087Zinc finger, C2H2
PfamPF139127.2E-124670IPR007087Zinc finger, C2H2
PROSITE patternPS0002804868IPR007087Zinc finger, C2H2
SMARTSM003550.2997119IPR015880Zinc finger, C2H2-like
PfamPF139122.6E-897120IPR007087Zinc finger, C2H2
PROSITE patternPS00028099119IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MKRSREEGEL ENMTNCLMLL TKVGVSETNP TSKGCGELRD SDVGDFKCKT CNRRFSSFQA  60
LGGHRASHKK PRLMITDLSC HHHTLPSPVT KQQPRMHPCP ICGLEFAIGQ ALGGHMRKHR  120
TAINGGLLNR RDSDSLSILK KSKDGGKLNL CLDLNLMPLE DDDLKLNLRT PVLNCFI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.005G141500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150401e-166AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007150296.11e-127hypothetical protein PHAVU_005G141500g
TrEMBLV7BZ091e-126V7BZ09_PHAVU; Uncharacterized protein
STRINGXP_007150296.11e-126(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.12e-28C2H2 family protein