PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.005G143100.1
Common NamePHAVU_005G143100g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family Dof
Protein Properties Length: 306aa    MW: 33380.3 Da    PI: 9.8533
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.005G143100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof122.31.7e-3870129362
              zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                         e alkcprC+stntkfCy+nnyslsqPr+fCk+CrryWt+GGalrnvPvGgg+r+nkk++
  Phvul.005G143100.1  70 EGALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKKNK 129
                         5679*****************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074788.0E-2856122IPR003851Zinc finger, Dof-type
PfamPF027011.1E-3272127IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.53473127IPR003851Zinc finger, Dof-type
PROSITE patternPS01361075111IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MVFSSIPVYL DPPNWQQQQN QHQANGSNTP QQLLHPMPQQ PQDPHAGVHE AAGPIQPGLM  60
ADRSKIPAQE GALKCPRCES TNTKFCYFNN YSLSQPRHFC KTCRRYWTRG GALRNVPVGG  120
GCRRNKKNKR SRSKSPVSTE KSSLPNSTSA MPELIGRFPT PFMASLQSMN RYGVGNAGVN  180
LREMQAQNGS HMGFQIGGQG HASTVTTTAG GGVEQWRFQQ FPFLNGFDSA SAVSSYPFQT  240
ETVEALVGDI AATSRVTQLP PRVKLEYNGG FNLSRSPLSV SENSNHYYSW TDLSGLASSS  300
ASHLL*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements. {ECO:0000269|PubMed:12887587}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.005G143100.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin and salicylic acid (SA). Repressed by jasmonic acid (JA). {ECO:0000269|PubMed:10758484, ECO:0000269|PubMed:12887587}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007150314.10.0hypothetical protein PHAVU_005G143100g
SwissprotQ9M2U15e-50DOF36_ARATH; Dof zinc finger protein DOF3.6
TrEMBLV7BYZ00.0V7BYZ0_PHAVU; Uncharacterized protein
STRINGXP_007150314.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65634143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37590.15e-37DNA binding with one finger 2.4