PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.005G145100.1
Common NamePHAVU_005G145100g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family GRAS
Protein Properties Length: 719aa    MW: 81081.6 Da    PI: 5.6847
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.005G145100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS374.41.4e-1143437151373
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPi 90 
                         l++lL+ cA+avs+++++ a++lL+++++++s  gd+ qRla+y+++AL+arl++ ++++     + ++    ++++ l+a+++f  ++P+
  Phvul.005G145100.1 343 LRTLLVLCAQAVSASNNRTANELLKQIRQHSSALGDASQRLAHYVANALEARLVGAGTGTQIFYmSHKK---FTTTDYLKAYQVFISACPF 430
                         5789***************************************************65555432213333...4599*************** PP

                GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefn 179
                          kf+h+ aN++I + +e++e++HiiDf+i +G+QWp L++ L+sR +gpp+lRiTg++ p++g   ++++eetg+rLak++++++vpfe++
  Phvul.005G145100.1 431 KKFAHFFANKMIIKTAEKAETLHIIDFGILYGFQWPILIKFLSSRVGGPPKLRITGIEYPQPGfrPSDRIEETGRRLAKYCKRFNVPFEYK 521
                         **************************************************************9**************************** PP

                GRAS 180 vlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270
                         ++ ++++e++++e+L+++++E+laVn+ ++ ++lldes +++s++++vL+l+++++P+++v +  + ++n++ F++rf eal +ys+++d+
  Phvul.005G145100.1 522 AIPSRNWETIQIEDLKIESNEVLAVNCLVRFKNLLDESIEVSSPKNAVLNLIRKMNPHIFVDAVVNGSYNAPFFVTRFKEALFHYSSIYDM 612
                         *9999************************************************************************************** PP

                GRAS 271 leaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlg 361
                         +++ ++re+e+r ++Ere++grei+nvvace  er+er et+++W+ r ++aGF+++pl+++ +++ +  lr+ + + +  +e+ g++++g
  Phvul.005G145100.1 613 FDTLISRENEWRLMLEREFFGREIMNVVACEALERVERPETYKQWQVRNTRAGFRQLPLDKELMAKFRGKLREWYHKDFVFDEDGGWMLQG 703
                         ***************************************************************************888************* PP

                GRAS 362 WkdrpLvsvSaW 373
                         Wk+r L++ S+W
  Phvul.005G145100.1 704 WKGRILYASSCW 715
                         ************ PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098567.025317696IPR005202Transcription factor GRAS
PfamPF035144.9E-112343715IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 719 aa     Download sequence    Send to blast
MDPNTVMSGY DFDEWDLNGH YTDLVTDPFS FQSDVGPPGF FPNTILDSDP LVSSSSASAA  60
VAATVEEDTD FSETFKFISQ ILMEENFEQK PCMCYDPLTL QHTEKSFYDA LELEPPLPLS  120
PNQHPLESPD GNSSNSTTDS ANSHDFKPSS PNTPVSGGGD ALHSSTHAPS FFVPPSALTK  180
INEGTLDLDS SVSKLLAENI FSDAESMLQF RRGLEEASKF LPQRAQLFTG FESTTVSAEP  240
KVGGDLTVKR ENLIGEKSRK NHARQDEEEG RSNKHSEVCV DEENEISEIF DKVLLSVENV  300
PLCVEKNVSV AVGDSNAKLR DQPVDGGKVR SKRQGKKKET VDLRTLLVLC AQAVSASNNR  360
TANELLKQIR QHSSALGDAS QRLAHYVANA LEARLVGAGT GTQIFYMSHK KFTTTDYLKA  420
YQVFISACPF KKFAHFFANK MIIKTAEKAE TLHIIDFGIL YGFQWPILIK FLSSRVGGPP  480
KLRITGIEYP QPGFRPSDRI EETGRRLAKY CKRFNVPFEY KAIPSRNWET IQIEDLKIES  540
NEVLAVNCLV RFKNLLDESI EVSSPKNAVL NLIRKMNPHI FVDAVVNGSY NAPFFVTRFK  600
EALFHYSSIY DMFDTLISRE NEWRLMLERE FFGREIMNVV ACEALERVER PETYKQWQVR  660
NTRAGFRQLP LDKELMAKFR GKLREWYHKD FVFDEDGGWM LQGWKGRILY ASSCWVPA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-493267171379Protein SCARECROW
5b3h_D2e-493267171379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.005G145100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007150338.10.0hypothetical protein PHAVU_005G145100g
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLV7BWE80.0V7BWE8_PHAVU; Uncharacterized protein
STRINGXP_007150338.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]