PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.005G152800.1
Common NamePHAVU_005G152800g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family FAR1
Protein Properties Length: 255aa    MW: 29362 Da    PI: 6.3588
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.005G152800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR185.86.8e-2777167190
                FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr..traetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                         +fY +Y++++GF+vr++++++s+ n++++ ++fvCskeg+r+++  +++++    + + tr gC+a++++ +++ gkw+vtk+++eHnH+l
  Phvul.005G152800.1  77 EFYIAYGRRIGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYVHRKDR-VlpPPPATREGCQAMIRLALRDGGKWVVTKFVKEHNHKL 166
                         6******************************************99883333.2448899*******************************9 PP

                FAR1  90 a 90 
                         +
  Phvul.005G152800.1 167 M 167
                         7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.3E-2477167IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MDHESGQGFD SDDSELDMQA EISEKHGKID EFSKNLELCG SEDEKFVELP ATEISTDIEA  60
VEPFIGMEFN SREEAREFYI AYGRRIGFTV RIHHNRRSRV NNQVIGQDFV CSKEGFRAKK  120
YVHRKDRVLP PPPATREGCQ AMIRLALRDG GKWVVTKFVK EHNHKLMSPS KVPWRGSGKH  180
LVSEDEKDKR IRELSLELYN ERQKCKRRCA AYEEQLNMIL NDLEKHTEHI SEKVAAVVRS  240
IREIEEEKSD SDGG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.005G152800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007150429.10.0hypothetical protein PHAVU_005G152800g
TrEMBLV7BZ970.0V7BZ97_PHAVU; Uncharacterized protein
STRINGXP_007150429.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF88613044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07500.11e-44FAR1 family protein