PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.005G158600.1
Common NamePHAVU_005G158600g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 482aa    MW: 52413.6 Da    PI: 9.166
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.005G158600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.74.3e-0592114123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         + C++C+k F r  nL+ H r H
  Phvul.005G158600.1  92 FICEICSKGFQRDQNLQLHRRGH 114
                         89*******************88 PP
2zf-C2H212.20.00056168190123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC +C+k +  +s+ k H +t+
  Phvul.005G158600.1 168 WKCDKCSKKYAVQSDWKAHSKTC 190
                         58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.58E-691114No hitNo description
Gene3DG3DSA:3.30.160.604.6E-591114IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.78392114IPR007087Zinc finger, C2H2
SMARTSM003550.04792114IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028094114IPR007087Zinc finger, C2H2
SMARTSM00355220133163IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.9E-4156189IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.58E-6163188No hitNo description
SMARTSM00355150168188IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MRIQKGPNMR KDHEGFDAPK TMSNLTSASG EASASSGNRT EIGSDYSQQY FATPPTQTET  60
PQKKKRNLPG NPDPEAEVVA LSPKTLLATN RFICEICSKG FQRDQNLQLH RRGHNLPWKL  120
KQRTSKEIRK KVYVCPEATC VHHDPSRALG DLTGIKKHFC RKHGEKKWKC DKCSKKYAVQ  180
SDWKAHSKTC GTREYRCDCG TLFSRRDSFI THRAFCDALA EESARSVTGI DMGIGIPNNS  240
ATTPTTPAAG VVISSSSHHH HHQEIHGNNF PLKKEQEGFM PPWLQQPPST IDLSSSSSSF  300
FSHHENPNPR GGGGGGPILP PYPTAPSPPH MSATALLQKA AQMGATITKT GSMIRTHQQP  360
HVSPHSFNLS SRDHQMTPTS NTTTGVGVGV SSSLLHHVIN SFSSPFEGTS FEDPFHGAVT  420
KTSAADDRAG GGGGGGNYNE TMTRDFLGLR PLSHTDILNI AGMGNCMNSQ LNETQNPWQG  480
S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-35164225364Zinc finger protein JACKDAW
5b3h_F2e-35164225364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118130KLKQRTSKEIRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.005G158600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150401e-179AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007150513.10.0hypothetical protein PHAVU_005G158600g
SwissprotQ8H1F51e-127IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLV7BWX00.0V7BWX0_PHAVU; Uncharacterized protein
STRINGXP_007150513.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-104indeterminate(ID)-domain 7
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]