PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.005G168900.1
Common NamePHAVU_005G168900g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family HD-ZIP
Protein Properties Length: 759aa    MW: 84368.5 Da    PI: 6.1912
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.005G168900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.22.2e-21105160156
                         TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         r+k +++t++q++e+e+lF+++++p++++r++L+k+lgL  rqVk+WFqNrR++ k
  Phvul.005G168900.1 105 RKKYHRHTADQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIK 160
                         7999************************************************9877 PP
2START225.81.3e-702764974206
                         HHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEE CS
               START   4 eeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kae 80 
                         ++a++el+k+a+ +ep+W +s     e++n+de++++f+ +++      +s+ea+r++gvv+ +l++lv+++ld + qW+e+++    ka+
  Phvul.005G168900.1 276 NQAMEELIKMATMGEPLWLRSFetgrEILNYDEYVKEFAVENScsgkpkRSIEASRDTGVVFVDLPRLVQSFLDAN-QWKEMFPclisKAA 365
                         689******************99***************998889********************************.************** PP

                         EEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEE CS
               START  81 tlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskv 164
                         t++vi++g      ga+qlm+aelq+l+p+vp R+++fvR+++ql+a++w+ivdvS+d  +++  ++s+v+++++pSg++ie+ksngh+kv
  Phvul.005G168900.1 366 TVDVICNGegsnrnGAVQLMFAELQMLTPMVPtREVYFVRFCKQLSAEQWAIVDVSIDKVEDNI-DASLVKCRKRPSGCIIEDKSNGHCKV 455
                         **************************************************************98.9************************* PP

                         EEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
               START 165 twvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                         +wveh +++++ +h+++r +v+sgla+gak+w  tlq qce+
  Phvul.005G168900.1 456 IWVEHLECQKSAVHSMYRTIVNSGLAFGAKHWITTLQLQCER 497
                         ****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.7E-2293156IPR009057Homeodomain-like
SuperFamilySSF466893.84E-2096163IPR009057Homeodomain-like
PROSITE profilePS5007118.091102162IPR001356Homeobox domain
SMARTSM003898.6E-19104166IPR001356Homeobox domain
PfamPF000461.0E-18105160IPR001356Homeobox domain
CDDcd000864.23E-17109160No hitNo description
PROSITE patternPS000270137160IPR017970Homeobox, conserved site
PROSITE profilePS5084838.276264500IPR002913START domain
SuperFamilySSF559611.92E-31267497No hitNo description
CDDcd088753.31E-110269496No hitNo description
SMARTSM002342.8E-69273497IPR002913START domain
PfamPF018522.1E-55275497IPR002913START domain
Gene3DG3DSA:3.30.530.202.4E-4327492IPR023393START-like domain
SuperFamilySSF559611.79E-14519719No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010062Biological Processnegative regulation of trichoblast fate specification
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 759 aa     Download sequence    Send to blast
MGADMSNNPP PSSHAKDFFA SPALSLSLAG IFHRAGVAAE AEAATSNMEV EEWEEGSGGG  60
ERLEEISSEN SGPTRSRSED DFEGEGEHED GDADADVDRK RKKKRKKYHR HTADQIREME  120
ALFKESPHPD EKQRQQLSKQ LGLAPRQVKF WFQNRRTQIK AIQERHENSL LKSEIEKLKE  180
KNKTLRETVN KACCPTCGVP TTSRDGAMPT EEQQLRIENA KLKAEVEKLR AALGKYAPGS  240
TSPSCSSGHD QENRSSLDFY TGIFGIDNSR IMDIVNQAME ELIKMATMGE PLWLRSFETG  300
REILNYDEYV KEFAVENSCS GKPKRSIEAS RDTGVVFVDL PRLVQSFLDA NQWKEMFPCL  360
ISKAATVDVI CNGEGSNRNG AVQLMFAELQ MLTPMVPTRE VYFVRFCKQL SAEQWAIVDV  420
SIDKVEDNID ASLVKCRKRP SGCIIEDKSN GHCKVIWVEH LECQKSAVHS MYRTIVNSGL  480
AFGAKHWITT LQLQCERLVF FMATNVPMKD STGVATLAGR KSILKLAQRM TWSFCHAIGA  540
SSFHTWTKVT SKNGEDIRIS SRKNLNDPGE PLGLILCAVS SVWLPVSQNV LFDFLRDETR  600
RSEWDIMSSG GTVQSIANLS KGQDRGNAVT IQTIKLKEKS VWILQDSCTN PYESMVVYAS  660
VDITGIQSVM TGCDSSNLAI LPSGFSIIPD GLESRPLVIT SRQEEKYTEG GSLFTMAFQI  720
LTNTSPTAKL TVESVDSVNT IVSCTLRNIR TSLQCEEG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
198106RKRKKKRKK
2100106RKKKRKK
3102106KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.005G168900.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311710.0KT031171.1 Glycine max clone HN_CCL_120 homeodomain/HOMEOBOX transcription factor (Glyma13g43350.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007150635.10.0hypothetical protein PHAVU_005G168900g
SwissprotP466070.0HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBLV7BXH50.0V7BXH5_PHAVU; Uncharacterized protein
STRINGXP_007150635.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47143352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Wu R,Citovsky V
    Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development.
    Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553
    [PMID:28526410]