PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.005G170600.1
Common NamePHAVU_005G170600g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ERF
Protein Properties Length: 211aa    MW: 23501.6 Da    PI: 5.8958
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.005G170600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.24.2e-184493255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  Phvul.005G170600.1 44 LYHGVRMRN-WGKWVSEIREPRK---KSRIWLGTFATPEMAARAHDVAALSIKG 93
                        69****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.34E-3143101No hitNo description
PfamPF008472.9E-124393IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.0E-3144102IPR001471AP2/ERF domain
SMARTSM003804.0E-3444107IPR001471AP2/ERF domain
PROSITE profilePS5103222.45844101IPR001471AP2/ERF domain
SuperFamilySSF541714.25E-2144102IPR016177DNA-binding domain
PRINTSPR003671.8E-94556IPR001471AP2/ERF domain
PRINTSPR003671.8E-96783IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MTDTPCHQTP PTSPCNSSSS KPHKTETPKQ SKPKRNRDPT RHPLYHGVRM RNWGKWVSEI  60
REPRKKSRIW LGTFATPEMA ARAHDVAALS IKGRAAILNF PTIVNLLPRP VTCAPRDIQV  120
AAAEAAAMVE FDRECSDEAE SSDLSEIVEL PNIEESLESV ESRSEFAFID SVDSWLYPPM  180
AVGSICEMMV GEDECGFFHF QTDHQKTCSV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-19421061277Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.005G170600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007150657.11e-156hypothetical protein PHAVU_005G170600g
SwissprotQ9LYD36e-57DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLV7C1961e-155V7C196_PHAVU; Uncharacterized protein
STRINGXP_007150657.11e-156(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.11e-52ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]