PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.005G175200.1
Common NamePHAVU_005G175200g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C3H
Protein Properties Length: 204aa    MW: 22883.6 Da    PI: 9.8413
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.005G175200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH283.8e-094063226
                        -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                        ktelCr+f+r G C +G +C +aH+
  Phvul.005G175200.1 40 KTELCRRFRR-GVCGHGIKCDYAHS 63
                        8*********.*************8 PP
2zf-CCCH24.45.2e-087294426
                        ---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH  4 elCrffartGtCkyGdrCkFaHg 26
                        +lCr f+++ +C+yG +C++ H+
  Phvul.005G175200.1 72 KLCRLFLQNKHCPYGRTCRYLHS 94
                        79********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.104.0E-123569IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.98E-73769IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-43864IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.4273865IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-64063IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.7796896IPR000571Zinc finger, CCCH-type
SMARTSM003564.8E-46895IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-87095IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.29E-77095IPR000571Zinc finger, CCCH-type
PfamPF006427.6E-67294IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MEAQAAAQTH HLRNSTESEK HNSNNNHHSN HNNNRNLMVK TELCRRFRRG VCGHGIKCDY  60
AHSVGELRRQ PKLCRLFLQN KHCPYGRTCR YLHSAATALP PPPSTFPIPN PQSQPEVGQL  120
DRSSSAEYKR MQTYAAVPSD SYPYAENSTM HTAIAATANA STSTLAAGSS HNNEPYAVKF  180
VFKKNELKKI NRIYADWISD FSR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.005G175200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150402e-83AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007150718.11e-152hypothetical protein PHAVU_005G175200g
TrEMBLV7BXJ11e-151V7BXJ1_PHAVU; Uncharacterized protein
STRINGXP_007150718.11e-152(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1595477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.12e-10C3H family protein