PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.006G005200.1
Common NamePHAVU_006G005200g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family CO-like
Protein Properties Length: 594aa    MW: 65720.3 Da    PI: 6.9177
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.006G005200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.83.3e-06193233539
            zf-B_box   5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 
                         +C+ +++++   +C+++  +lC +C  + H+       H++
  Phvul.006G005200.1 193 ICDFCGDQRSMVYCRSDAAYLCLSCDRNVHSAnalsrrHSR 233
                         7*****************************65677777765 PP
2zf-B_box20.41e-06235276440
            zf-B_box   4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 
                           C++++++++   C + +  lC++C   +H g      H+++
  Phvul.006G005200.1 235 LLCERCNSQPAFVRCVEEKISLCQNCDWLGH-GvstsstHKRQ 276
                         57****************************9.66778888876 PP
3CCT59.98.3e-21536579144
                 CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                         R +a+lRYkeK+k RkFeK++rY+sRKa+A+ R RvKGrFvk+ 
  Phvul.006G005200.1 536 RSNAVLRYKEKKKARKFEKQVRYASRKARADVRRRVKGRFVKAG 579
                         899**************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.082189236IPR000315B-box-type zinc finger
SMARTSM003369.5E-10189236IPR000315B-box-type zinc finger
CDDcd000212.04E-6193236No hitNo description
PROSITE profilePS501198.887232278IPR000315B-box-type zinc finger
CDDcd000211.26E-4236278No hitNo description
SMARTSM003361237278IPR000315B-box-type zinc finger
PfamPF062034.1E-15536578IPR010402CCT domain
PROSITE profilePS5101715.11536578IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 594 aa     Download sequence    Send to blast
MAPLALYFFP LWFALFITFA YVTLPTHSLS LSLSHTHTPF ALFFFSFHIS STFIHLLSSY  60
SFLSPLLNTP HHTSLARAEA RREERETHTK SKREKGPFVL FKKFSSFYFQ DSFFAFKFCI  120
QIIFFFFFSE KATPFCLLIL FSLSSLPSAS ASSDRENFCF FRVYLGLSRL LLGGDSLIYS  180
KGQEKKSVKM GYICDFCGDQ RSMVYCRSDA AYLCLSCDRN VHSANALSRR HSRTLLCERC  240
NSQPAFVRCV EEKISLCQNC DWLGHGVSTS STHKRQAISC YSGCPSAAEL SSIWSFVLDI  300
PSIRESTCEQ ELGLMSINEN NKSVGVLPEN GNVSGSDQVT DLPSLDKSLV GTSSVPESSS  360
KPPAGPANEC LPKLYCPAAK CPALCEDDNL YDDFDMDEMD LNLENYEELF GVALSHSEEL  420
FENGGFNSLF GTKDMSAGDS SCQDAIAAEG SSVGLVNATQ PACSNAASAD SILSTKTEPV  480
LCLTGRQAQS NLSFSGITGE SSAADYQDCG ASSMLLRGEP PWFAPCPENS LQSANRSNAV  540
LRYKEKKKAR KFEKQVRYAS RKARADVRRR VKGRFVKAGD VYDYDPLSTT RSY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.006G005200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007146011.10.0hypothetical protein PHAVU_006G005200g
SwissprotQ9SSE51e-150COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLV7BLU20.0V7BLU2_PHAVU; Uncharacterized protein
STRINGXP_007146011.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43623353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.41e-130CONSTANS-like 9