PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.006G013200.1
Common NamePHAVU_006G013200g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family HD-ZIP
Protein Properties Length: 253aa    MW: 29180.7 Da    PI: 5.0102
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.006G013200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox597.6e-1957110356
                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         k+++++ +q+++Le+ Fe ++++  e++ +LA++lgL+ rqV +WFqNrRa++k
  Phvul.006G013200.1  57 KKRRLSLDQVKALERNFELDNKLEPERKSKLAQQLGLQPRQVAIWFQNRRARWK 110
                         4557999**********************************************9 PP
2HD-ZIP_I/II128.23.4e-4156148193
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                         ekkrrls +qvk+LE++Fe ++kLeperK++la++Lglqprqva+WFqnrRAR+ktkqlE+dy  Lk++yd lk e ++Le+++e+L+ ++
  Phvul.006G013200.1  56 EKKRRLSLDQVKALERNFELDNKLEPERKSKLAQQLGLQPRQVAIWFQNRRARWKTKQLERDYGILKSNYDVLKVEYNNLEQDNEALTVQV 146
                         69**************************************************************************************998 PP

         HD-ZIP_I/II  92 ke 93 
                         +e
  Phvul.006G013200.1 147 SE 148
                         76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.11952112IPR001356Homeobox domain
SMARTSM003891.0E-1655116IPR001356Homeobox domain
SuperFamilySSF466891.45E-1857124IPR009057Homeodomain-like
PfamPF000464.6E-1657110IPR001356Homeobox domain
CDDcd000868.66E-1657113No hitNo description
Gene3DG3DSA:1.10.10.609.4E-2059118IPR009057Homeodomain-like
PRINTSPR000313.5E-68392IPR000047Helix-turn-helix motif
PROSITE patternPS00027087110IPR017970Homeobox, conserved site
PRINTSPR000313.5E-692108IPR000047Helix-turn-helix motif
PfamPF021831.6E-15112153IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MKRLNNSNTM ATSLSMCPSK GLNERMETQG YSEEFKAMLD RLDQEDSYED CSLVLEKKRR  60
LSLDQVKALE RNFELDNKLE PERKSKLAQQ LGLQPRQVAI WFQNRRARWK TKQLERDYGI  120
LKSNYDVLKV EYNNLEQDNE ALTVQVSELK EKLLRGKAEN NESIKEESPI SKVRDGVASE  180
SNSNGVVKEE NNIDSTFCVN GSLPSSRPVL QYSDSRGSPD KNFQTQFMRM EEQNFFSINE  240
FCFFSVDQSP TL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104112RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that may act as growth regulators in response to water deficit. Interacts with the core sequence 5'-CAATTATTA-3' of promoters in response to ABA and in an ABI1-dependent manner. Involved in the negative regulation of the ABA signaling pathway. {ECO:0000269|PubMed:10527431, ECO:0000269|PubMed:12065416}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.006G013200.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. Self expression regulation. {ECO:0000269|PubMed:10527431, ECO:0000269|PubMed:12065416, ECO:0000269|PubMed:16055682}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007146109.10.0hypothetical protein PHAVU_006G013200g
SwissprotP466686e-50ATHB6_ARATH; Homeobox-leucine zipper protein ATHB-6
TrEMBLV7BM410.0V7BM41_PHAVU; Uncharacterized protein
STRINGXP_007146109.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18683489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22430.13e-52homeobox protein 6
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]