PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.006G023100.1
Common NamePHAVU_006G023100g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family NAC
Protein Properties Length: 307aa    MW: 35645.5 Da    PI: 8.3654
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.006G023100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.63e-50191462128
                 NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                          pGfrFhPtdeelv +yL++kve+k+l++ e ik+vdiyk++PwdLpk  + ++kewyfF+ r +ky+++ r+nr+t+sg+Wkatg dk++
  Phvul.006G023100.1  19 LPGFRFHPTDEELVGFYLQRKVEKKPLKI-ELIKQVDIYKYDPWDLPKVNSFGDKEWYFFCIRGRKYRNSVRPNRVTRSGFWKATGIDKSI 108
                         69***************************.89***************6666699************************************* PP

                 NAM  93 lsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++    +e +glkk+Lv+y+g+a kg+ktdW+mhe+rl
  Phvul.006G023100.1 109 YCLkePHECIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 146
                         *97445566***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.89E-5515176IPR003441NAC domain
PROSITE profilePS5100553.01318177IPR003441NAC domain
PfamPF023652.4E-2520146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005992Biological Processtrehalose biosynthetic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006561Biological Processproline biosynthetic process
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010120Biological Processcamalexin biosynthetic process
GO:0042538Biological Processhyperosmotic salinity response
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MNDKVQDCDD TKKAEEVVLP GFRFHPTDEE LVGFYLQRKV EKKPLKIELI KQVDIYKYDP  60
WDLPKVNSFG DKEWYFFCIR GRKYRNSVRP NRVTRSGFWK ATGIDKSIYC LKEPHECIGL  120
KKSLVYYRGS AGKGTKTDWM MHEFRLPPNA KSTTNIANAT NNLHEAEVWT LCRIFKRTPT  180
FKKYTPNLKD STAITKSNTV NSNTSTLDSD NCKPYLICRD TEMMQQLKPV FGQVDEKKHL  240
FLGQFGQLPH LQTPSTPYPS FWNQNVEEYA FANENWDDLR SVVQFAIDPS SVFDCTEETH  300
IPPYFS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-472018319171NO APICAL MERISTEM PROTEIN
1ut4_B3e-472018319171NO APICAL MERISTEM PROTEIN
1ut7_A3e-472018319171NO APICAL MERISTEM PROTEIN
1ut7_B3e-472018319171NO APICAL MERISTEM PROTEIN
3swm_A3e-472018322174NAC domain-containing protein 19
3swm_B3e-472018322174NAC domain-containing protein 19
3swm_C3e-472018322174NAC domain-containing protein 19
3swm_D3e-472018322174NAC domain-containing protein 19
3swp_A3e-472018322174NAC domain-containing protein 19
3swp_B3e-472018322174NAC domain-containing protein 19
3swp_C3e-472018322174NAC domain-containing protein 19
3swp_D3e-472018322174NAC domain-containing protein 19
4dul_A3e-472018319171NAC domain-containing protein 19
4dul_B3e-472018319171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00310DAPTransfer from AT2G43000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.006G023100.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0938380.0BT093838.1 Soybean clone JCVI-FLGm-14E12 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007146230.10.0hypothetical protein PHAVU_006G023100g
SwissprotQ9SK551e-90NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLV7BJQ60.0V7BJQ6_PHAVU; Uncharacterized protein
STRINGXP_007146230.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101334112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.13e-88NAC domain containing protein 42
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]