PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.006G025400.1
Common NamePHAVU_006G025400g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family G2-like
Protein Properties Length: 220aa    MW: 25223.2 Da    PI: 8.2523
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.006G025400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like95.44.3e-301870254
             G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54
                        prlrWtpeLHe Fve+ve LGG++kAtPk+il++m+vkgL ++h+kSHLQ+YR
  Phvul.006G025400.1 18 PRLRWTPELHEYFVEVVEGLGGKNKATPKSILQMMHVKGLRISHIKSHLQMYR 70
                        9**************************************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.6291474IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-271471IPR009057Homeodomain-like
SuperFamilySSF466897.7E-151671IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-221771IPR006447Myb domain, plants
PfamPF002497.2E-81970IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MKNSKKTGVR KYQKSENPRL RWTPELHEYF VEVVEGLGGK NKATPKSILQ MMHVKGLRIS  60
HIKSHLQMYR NLKGHMILSS MHEKMEGNEE VKDLPMYSNC SSQRSQEKFR TSKYDTGIVT  120
QQTRTLENKG LSQSSETDYD LNQEPESCYI HSDTSNEENS RTMKFLDLSF SFSSQLFPTM  180
HGNQERMHFS SPNTADNHAL DSNPVQSHGT NYINLDLAI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A7e-181973458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B7e-181973458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A7e-181973458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C7e-181973458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D7e-181973458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F7e-181973458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H7e-181973458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J7e-181973458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.006G025400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150382e-52AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007146259.11e-165hypothetical protein PHAVU_006G025400g
TrEMBLV7BMJ31e-163V7BMJ3_PHAVU; Uncharacterized protein
STRINGXP_007146259.11e-164(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91862839
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02060.17e-26G2-like family protein