PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.006G029200.1
Common NamePHAVU_006G029200g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bZIP
Protein Properties Length: 316aa    MW: 34139.4 Da    PI: 5.3068
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.006G029200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_149.11.2e-15235296162
                         XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                         +ke+kr +r+ +NR++A+  R+RKka++  Le++vk Le++N++Lk++l++l++e + l++ 
  Phvul.006G029200.1 235 DKESKRLKRLLRNRVSAQQARERKKAYLIDLETRVKDLEKKNSELKERLSTLQNENQMLRQI 296
                         689******************************************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578501.45E-3123109No hitNo description
Gene3DG3DSA:3.30.40.105.8E-2924113IPR013083Zinc finger, RING/FYVE/PHD-type
PfamPF145691.4E-3529105IPR027934Cellulose synthase, RING-type zinc finger
PROSITE profilePS500899.2143985IPR001841Zinc finger, RING-type
SMARTSM003385.0E-17235299IPR004827Basic-leucine zipper domain
PfamPF001705.4E-14236297IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.702237300IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.6E-16239299No hitNo description
SuperFamilySSF579595.13E-13239297No hitNo description
CDDcd147048.27E-21240291No hitNo description
PROSITE patternPS000360242257IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0010099Biological Processregulation of photomorphogenesis
GO:0010114Biological Processresponse to red light
GO:0010218Biological Processresponse to far red light
GO:0010224Biological Processresponse to UV-B
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0003690Molecular Functiondouble-stranded DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MERSGGMVTG SHERNELVTV RHGSDSGSKP VKNLNGQICQ ICGDTIGLTA TGDVFVACHE  60
CGLPLCHSCY EYELKNVSQS CPQCKTRFTS HQEGAGVEGD DDDDEDADDL DNEINYGQGN  120
NSKAGMQWEE DADFSSSSGH DSQIPNPHLA NGQPMSGDIP CATSDAQSMQ TTSGLMAAAK  180
QPGPESDEEI RRVPEIGGES AGTVASRPDA RSNAGAERVQ GTGEGQKKRG RSPADKESKR  240
LKRLLRNRVS AQQARERKKA YLIDLETRVK DLEKKNSELK ERLSTLQNEN QMLRQILKNT  300
TASRRGSNSG TNNAE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1weo_A8e-262688668cellulose synthase, catalytic subunit (IRX3)
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00117ampDAPTransfer from AT5G11260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.006G029200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankSOYSTF1A0.0L28003.1 Glycine max TGACG-motif binding protein (STF1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007146305.10.0hypothetical protein PHAVU_006G029200g
TrEMBLV7BJY10.0V7BJY1_PHAVU; Uncharacterized protein
STRINGXP_007146305.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70643248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11260.13e-55bZIP family protein