PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.006G030400.1

Common Name

PHAVU_006G030400g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

SRS

Protein Properties

Length: 363aa MW: 38849.5 Da PI: 7.2189

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.006G030400.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	210.9	3.2e-65	139	300	2	154
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstkls 92 +sgt++CqdCGnqakkdC+h+RCRtCCksrgfdC thvkstWvpaa+rrerq ++ +a+ +s +++ +k++r ++++++s+t++s Phvul.006G030400.1 139 GSGTSTCQDCGNQAKKDCSHRRCRTCCKSRGFDCVTHVKSTWVPAARRRERQLMTVTAAVG--SSGSTSVTKKPRLV-PSQTTTTSHTSTS 226 57999********************************************8777666444..45578888899976.4444555555444 PP DUF702 93 ..saeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +++++++++t s lP +v+++a f+cvrv++vddg++e+aYq++v+igGhvfkG+LydqG+e+ Phvul.006G030400.1 227 nnTTTPPRSFDTGSshqdvsfkesLPCQVRAPAEFKCVRVTAVDDGDDEYAYQAVVKIGGHVFKGFLYDQGVED 300 004566778887778999****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.1E-60	142	299	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	4.0E-27	144	186	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	1.7E-28	251	298	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence Send to blast
MWPGVSRSFN HNLSPHHDIF VVAPASSFHH HHHNDAVLSD PSNNSSNGTA LGVNVFPLLT 60 ATPCLTPESE GIMGNINNHR NRIQLWQPQE SPQHQHADGV LASNHRGRIQ LWQEHDESPP 120 QQQQHPNAHV HEREGSGSGS GTSTCQDCGN QAKKDCSHRR CRTCCKSRGF DCVTHVKSTW 180 VPAARRRERQ LMTVTAAVGS SGSTSVTKKP RLVPSQTTTT SHTSTSNNTT TPPRSFDTGS 240 SHQDVSFKES LPCQVRAPAE FKCVRVTAVD DGDDEYAYQA VVKIGGHVFK GFLYDQGVED 300 KSEYPNLSEL HLGGGGNVAS GSDGGGRNGV SSSSPMVDPS DVYAASGGVL LGGSSNYGNA 360 IN*

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence Send to blast

MWPGVSRSFN HNLSPHHDIF VVAPASSFHH HHHNDAVLSD PSNNSSNGTA LGVNVFPLLT  60
ATPCLTPESE GIMGNINNHR NRIQLWQPQE SPQHQHADGV LASNHRGRIQ LWQEHDESPP  120
QQQQHPNAHV HEREGSGSGS GTSTCQDCGN QAKKDCSHRR CRTCCKSRGF DCVTHVKSTW  180
VPAARRRERQ LMTVTAAVGS SGSTSVTKKP RLVPSQTTTT SHTSTSNNTT TPPRSFDTGS  240
SHQDVSFKES LPCQVRAPAE FKCVRVTAVD DGDDEYAYQA VVKIGGHVFK GFLYDQGVED  300
KSEYPNLSEL HLGGGGNVAS GSDGGGRNGV SSSSPMVDPS DVYAASGGVL LGGSSNYGNA  360
IN*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.006G030400.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015038	0.0	AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007146319.1	0.0	hypothetical protein PHAVU_006G030400g
Swissprot	Q94CK9	1e-78	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	V7BMQ0	0.0	V7BMQ0_PHAVU; Uncharacterized protein
STRING	XP_007146319.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6504	33	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.2	5e-68	Lateral root primordium (LRP) protein-related

Link Out ? help Back to Top
Phytozome	Phvul.006G030400.1
Entrez Gene	18627620

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]