PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.006G034200.1
Common NamePHAVU_006G034200g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family HSF
Protein Properties Length: 488aa    MW: 54538.3 Da    PI: 5.3831
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.006G034200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.92.1e-35211112101
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl k+y++++d+++++++sws++++sfvv+++ efa+ +Lp+yFkh+nf+SF+RQLn+YgF+k++ e+         weF++++F kg+k+
  Phvul.006G034200.1  21 FLLKTYDMVDDSSTSDIVSWSSSNTSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIHPER---------WEFANEEFVKGQKH 102
                         9****************************************************************999.........************** PP

                         XXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkk 101
                         ll++i+r+k
  Phvul.006G034200.1 103 LLKNIHRRK 111
                         *******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467855.9E-3617110IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.0E-6117110IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.0E-3717110IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004474.9E-3121110IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-182144IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-185971IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406084IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-187284IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MDGAAQSAAA AAAAAGGPAP FLLKTYDMVD DSSTSDIVSW SSSNTSFVVW NPPEFARLLL  60
PTYFKHNNFS SFIRQLNTYG FRKIHPERWE FANEEFVKGQ KHLLKNIHRR KPIHSHSHPP  120
GTIVDPERAA FEEEIEKLSN EKSSLESNIH NFRQHQSTAK LQLEDFLQRL DGTEKRQKQL  180
LNFFEKALQN PSFVEHLSRK IESMDLSAYN KKRRLPQVDN VQPIAESSLV DSQSNFRMEF  240
GNVFHQDFSN KLRLELSPAV SDMNLVSRST QSSNEDEESP QKKLSEVEPK GVQTRTALTF  300
APETLELADT GTSFTFKMDS CLSLKATAAE SSKQISLEPS SEEGDSHISC QLNLTLASCS  360
LQANRNSYLA RSPQIDCQEI GKLAESRFFS SGKESESGVS SNQNAAAEAT NLASPQEAPN  420
NNNPVNPAPP EKVNDVFWEQ FLTERPGCSD NEEAISNYRA NPYDEQDEGR SAHGISRNIK  480
NMDQLRL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B7e-221011019129Heat shock factor protein 1
5d5v_B7e-221011019129Heat shock factor protein 1
5d5v_D7e-221011019129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.006G034200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0976510.0BT097651.1 Soybean clone JCVI-FLGm-26G4 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007146362.10.0hypothetical protein PHAVU_006G034200g
SwissprotQ94BZ51e-162HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBLV7BP480.0V7BP48_PHAVU; Uncharacterized protein
STRINGXP_007146362.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49613253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13980.11e-132HSF family protein
Publications ? help Back to Top
  1. Reňák D,Gibalová A,Solcová K,Honys D
    A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein.
    Plant Cell Environ., 2014. 37(3): p. 670-83
    [PMID:23961845]