PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.006G057800.1

Common Name

PHAVU_006G057800g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

NF-YB

Protein Properties

Length: 232aa MW: 25290.5 Da PI: 5.5992

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.006G057800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	109.6	1.8e-34	52	142	6	96
NF-YB 6 rflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 +Pi+nv++im+k lP+nak+s+ ake++q+ ++++i+fvt++a +kc e rk +n+ddllwa+ ++Gf++y+ pl ++l++ r++eg Phvul.006G057800.1 52 SKMPITNVTKIMRKFLPNNAKVSDGAKEMIQQSATNYITFVTKKAKEKCLSEYRKIMNADDLLWAIQNVGFDEYIGPLGTFLQRCRNIEGG 142 579*************************************************************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	6.6E-30	47	142	IPR009072	Histone-fold
Pfam	PF00808	4.1E-17	53	117	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	1.39E-23	53	147	IPR009072	Histone-fold
PRINTS	PR00615	6.7E-7	81	99	No hit	No description
PRINTS	PR00615	6.7E-7	100	118	No hit	No description
PRINTS	PR00615	6.7E-7	119	137	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MEHGGSFFHI DQQVKSSSVP LQQENNYANT EIAAPANSNG GQNPNLIGRD KSKMPITNVT 60 KIMRKFLPNN AKVSDGAKEM IQQSATNYIT FVTKKAKEKC LSEYRKIMNA DDLLWAIQNV 120 GFDEYIGPLG TFLQRCRNIE GGTHGPTFGP GLNPMEMPHP PLPPPPPPPP PPPPPPAAAV 180 YSSGLDFSMH QNTNPEMFDT NDVGGYLEAV GCSSNAFINF DPFSLFQQDQ L*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	2e-27	54	138	13	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.006G057800.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015038	1e-112	AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007146648.1	1e-172	hypothetical protein PHAVU_006G057800g
TrEMBL	V7BL20	1e-170	V7BL20_PHAVU; Uncharacterized protein
STRING	XP_007146648.1	1e-171	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF591	34	150

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21970.1	5e-34	NF-YB family protein

Link Out ? help Back to Top
Phytozome	Phvul.006G057800.1
Entrez Gene	18627906