PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.006G064800.1
Common NamePHAVU_006G064800g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 387aa    MW: 42343.5 Da    PI: 8.8415
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.006G064800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.00024148171123
                         EEETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                         ++C+ Cg+ F  +++L++H+ + H
  Phvul.006G064800.1 148 FPCTACGEIFQKPHLLETHQTLkH 171
                         89******************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.432148172IPR007087Zinc finger, C2H2
PROSITE patternPS000280150171IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.90.228.106.0E-6174291IPR012317Poly(ADP-ribose) polymerase, catalytic domain
SuperFamilySSF563997.58E-15175385No hitNo description
Gene3DG3DSA:3.90.228.107.4E-6321385IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MASSINTFFN KFLYLLILLL HLGCFLFTTT TAGGKKAPLS KKRKILPSSQ PSSPSHPKFK  60
THKALSSSWH FIKHLLSTNS CKTPKTVTAQ SSPQSTATAS TTTVSAAAAR SLVSLTQPDP  120
DRKPPGSCPE SDISADTNLF FPLRNDIFPC TACGEIFQKP HLLETHQTLK HAVSDLSGSD  180
PGHNIVQIIF KSGWPESKPS PTITRILKIH NSPKILAKFE EYREVVKSKA ARHGALTRRR  240
DERCIADGNE LMRFHCSTFL CDLGHSGDSS ICSQQFCNIC GIIKSGFSPK LDGIATLSTS  300
WRAHVAIPDD VEREFSFMNV KRAMLVCRVI AGRVGSDSDD AEKADGGFDS VMARPDTGVY  360
TRLDEEELLV FNPRAVLPCF VIVYSV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.006G064800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007146728.10.0hypothetical protein PHAVU_006G064800g
TrEMBLV7BL990.0V7BL99_PHAVU; Uncharacterized protein
STRINGXP_007146728.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106682936
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29660.11e-106C2H2 family protein