PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.006G078500.1

Common Name

PHAVU_006G078500g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

bZIP

Protein Properties

Length: 417aa MW: 45059.5 Da PI: 6.0267

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.006G078500.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.8	1.5e-10	217	275	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK +i+eLe+kv++L++e ++L +l ++ l se+ Phvul.006G078500.1 217 KRAKRILANRQSAARSKERKARYIQELERKVQTLQTEATTLSAQLTLYQRDTTGLSSEN 275 9*****************************************99999888777776665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	6.5E-16	213	277	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.818	215	278	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.1E-8	217	272	No hit	No description
SuperFamily	SSF57959	9.14E-11	217	268	No hit	No description
Pfam	PF00170	3.9E-9	217	275	IPR004827	Basic-leucine zipper domain
CDD	cd14703	2.16E-23	218	267	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 417 aa Download sequence Send to blast
MCLERGEEES RERLSVFVLE TEHRSEKNRT QKGMATQTQD SPSNPNPNLN ATSSTPSASL 60 FFLGAGSSAA PVAGSGESHS HHRRALSEVS YRLPDDMMDL SPSDPFNGGS STASLEEIGS 120 EDDLFSTYID VEKLGGGANG AGRGGNGSDQ NGYGNGTGTS GHNDGEKSPS AEEARPRHRH 180 SSSVDGSSST SMFGEIMEAK KAMPPDKLAE LWNIDPKRAK RILANRQSAA RSKERKARYI 240 QELERKVQTL QTEATTLSAQ LTLYQRDTTG LSSENTELKL RLQAMEQQAQ LRDALNDALM 300 KEVERLKIAT GEALNNHSES FNIGMHQMPF AGSNFFSIPP HSGPLSHQNM QLPPFGLSQS 360 SMPAHQLHQT NSHQISDVLQ NDQLGRLQGL DISSNGSSFV KSEGPSISAN ESSTKF*

Sequence ? help Back to Top

Protein Sequence Length: 417 aa Download sequence Send to blast

MCLERGEEES RERLSVFVLE TEHRSEKNRT QKGMATQTQD SPSNPNPNLN ATSSTPSASL  60
FFLGAGSSAA PVAGSGESHS HHRRALSEVS YRLPDDMMDL SPSDPFNGGS STASLEEIGS  120
EDDLFSTYID VEKLGGGANG AGRGGNGSDQ NGYGNGTGTS GHNDGEKSPS AEEARPRHRH  180
SSSVDGSSST SMFGEIMEAK KAMPPDKLAE LWNIDPKRAK RILANRQSAA RSKERKARYI  240
QELERKVQTL QTEATTLSAQ LTLYQRDTTG LSSENTELKL RLQAMEQQAQ LRDALNDALM  300
KEVERLKIAT GEALNNHSES FNIGMHQMPF AGSNFFSIPP HSGPLSHQNM QLPPFGLSQS  360
SMPAHQLHQT NSHQISDVLQ NDQLGRLQGL DISSNGSSFV KSEGPSISAN ESSTKF*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269\|PubMed:14704272}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.006G078500.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015038	0.0	AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007146883.1	0.0	hypothetical protein PHAVU_006G078500g
Swissprot	Q6S4P4	1e-102	RF2B_ORYSJ; Transcription factor RF2b
TrEMBL	V7BLP8	0.0	V7BLP8_PHAVU; Uncharacterized protein
STRING	XP_007146883.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1548	34	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06850.1	8e-91	basic leucine-zipper 52

Link Out ? help Back to Top
Phytozome	Phvul.006G078500.1
Entrez Gene	18628122

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Dai S,Zhang Z,Bick J,Beachy RN Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus. J. Gen. Virol., 2006. 87(Pt 3): p. 715-22 [PMID:16476995] Liu Y,Dai S,Beachy RN Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription. Biochem. J., 2007. 405(2): p. 243-9 [PMID:17371296] Dai S, et al. Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease. Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6 [PMID:19104064]