PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.006G079300.1
Common NamePHAVU_006G079300g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family B3
Protein Properties Length: 912aa    MW: 101042 Da    PI: 6.8462
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.006G079300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B364.61.5e-20339439199
                         EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                         f+kvl+ sd+++ grlvlpk +ae++  ++++ e++ l+++d +g++W++++++  +++s++yvl+ G     +a +L++gD+v+F++++ 
  Phvul.006G079300.1 339 FEKVLSASDAGRIGRLVLPKACAEAYfpSISQSEGVPLRMQDVKGNEWTFQFRFwpNNNSRMYVLE-GVTPCIQAMQLRAGDTVTFSRID- 427
                         99**************************777789999***************9989999999***9.********************987. PP

                         SEE..EEEEE-S CS
                  B3  88 sefelvvkvfrk 99 
                          +++lv++++r+
  Phvul.006G079300.1 428 PGGKLVMGFRRA 439
                         899899999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-30335448IPR015300DNA-binding pseudobarrel domain
CDDcd100172.50E-24337438No hitNo description
SuperFamilySSF1019361.7E-20337438IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.138339440IPR003340B3 DNA binding domain
PfamPF023621.7E-17339439IPR003340B3 DNA binding domain
SMARTSM010192.5E-23339440IPR003340B3 DNA binding domain
PROSITE profilePS5105013.75601651IPR011124Zinc finger, CW-type
PfamPF074961.4E-9606648IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 912 aa     Download sequence    Send to blast
MGSDICVVNG SCTHEWRKGW PLRSGGFAQL CCKCGFMEEW KGDILEPLST YENSVFCSKF  60
HHQQTGWREC NFCNKPIHCG CMVSRSLFEH LDYGGIGCVS CVNTSQLSTM RNIENPNGPV  120
SLIKNNASDR PSSHSEGRLF ARGVDEGKLM QFCKIIEASE SSRWNNAQRD GIISRHGHNN  180
QEAKCSFGEG DIGFSNVMKP SVQSLTFATL ENNRSPWEIK NIHEANVQPS LSMYLGNASG  240
NNSVLPSAGE AVEGRLEGKP SPPFHQGQRS RPIFPKPLKS GLTMNVEIDK GTISQSRVAR  300
PPADGRGKNQ LLPRYWPRIT DQELERLSGD LKSTVVPLFE KVLSASDAGR IGRLVLPKAC  360
AEAYFPSISQ SEGVPLRMQD VKGNEWTFQF RFWPNNNSRM YVLEGVTPCI QAMQLRAGDT  420
VTFSRIDPGG KLVMGFRRAS NSADTQDTST SAQSNSAKGT TSAGTENLPS GSSHANLLLS  480
MKGGNVEPHL NGQREHLHLG TGTSELLITE NNGMTNNSSV QQKFLSLEKK KTRNIGPKSK  540
RLLIDNEDAR ELKLTWEEAQ DLLRPPPSVK PSIVTIEDQV FEEYDEPPVF GKRTIFSTCS  600
SGVKEQWAQC DDCSKWRKVP IDALLPANWT CFDNAWDSIR CSCTVPEELS SGELENLLKT  660
DKDFKKRRSD EKSKSIQEHE ASGLEALACA AALGENLVDT AESSAGATTK HPRHRPGCSC  720
IVCIQPPSGK GRHKPTCTCN VCLTVKRRFK TLMLRKKKRQ SEREAEAAQK DQVLQKEESD  780
TNETSRDDAT QLEKEVVGLS RSQAEGGESS AAGQIDLNSH PNREDMQVDI TGVMFCETDP  840
STVREYMNQN GPRSYNNELQ NGENSSLHTS QSNVEGQRHF SDLRSFASIM WNQERRDEED  900
SEPNQSQNNL C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A2e-683174462131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1745756KRRFKTLMLRKK
2745758KRRFKTLMLRKKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.006G079300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007146893.10.0hypothetical protein PHAVU_006G079300g
RefseqXP_007146894.10.0hypothetical protein PHAVU_006G079300g
TrEMBLV7BLQ50.0V7BLQ5_PHAVU; Uncharacterized protein
STRINGXP_007146893.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF103233039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.10.0high-level expression of sugar-inducible gene 2