PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.006G093900.1
Common NamePHAVU_006G093900g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 322aa    MW: 36005.6 Da    PI: 6.0732
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.006G093900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH413.4e-13131182155
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i   A++++k+L+
  Phvul.006G093900.1 131 QRMTHIAVERNRRKQMNEYLSVLRSLMPES---YVQRGDQASIIGGAINFVKELE 182
                         79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.27E-13129186No hitNo description
Gene3DG3DSA:4.10.280.105.8E-14129186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-16130194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.402130181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-10131182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.6E-10136187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MCLSEGERVM ALEAVVYPQP QDPFGCAIKD PYNYNNLLEA AAAGNWGYAD FTLEKEDQAC  60
VTFMDNQTEN CPYGEWNSSP PSLLPHNMNA SNPPSETSNT QNNLDSSVST PARPKRRRTK  120
SRKNKEEIEN QRMTHIAVER NRRKQMNEYL SVLRSLMPES YVQRGDQASI IGGAINFVKE  180
LEQRLQFLGA QKEKEGKPDV PFSEFFSFPQ YSTSASGGCD NSAAMSEQKG EVQSGIADIE  240
VTMVESHANL KIRSKKRPKQ LLKIVSSLHG MRLTILHLNV TTTKEIVLYS LSVKVEEDCK  300
LGSVDEIAAA VYQMLNRIQQ E*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131142RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.006G093900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007147072.10.0hypothetical protein PHAVU_006G093900g
SwissprotQ9C7T47e-80BH096_ARATH; Transcription factor bHLH96
TrEMBLV7BR620.0V7BR62_PHAVU; Uncharacterized protein
STRINGXP_007147072.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71834135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.16e-81bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]