PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.006G114800.1
Common NamePHAVU_006G114800g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB
Protein Properties Length: 282aa    MW: 31796.9 Da    PI: 9.1013
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.006G114800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.83.8e-161461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg+WT+ Ed ll ++++ +G g+W++ +++ g+ R++k+c++rw +yl
  Phvul.006G114800.1 14 RGPWTPREDALLTKYIQAHGEGQWRSLPKRAGLLRCGKSCRLRWMNYL 61
                        89******************************99************97 PP
2Myb_DNA-binding52.61e-1667112148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg+ ++eEd+l+++ + +lG++ W++Ia +++ gRt++++k++w+++l
  Phvul.006G114800.1  67 RGNISPEEDDLIIRMHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 112
                         7899******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.793961IPR017930Myb domain
SuperFamilySSF466897.34E-3011108IPR009057Homeodomain-like
SMARTSM007176.5E-131363IPR001005SANT/Myb domain
PfamPF002491.1E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-241568IPR009057Homeodomain-like
CDDcd001674.41E-101661No hitNo description
PROSITE profilePS5129426.91562116IPR017930Myb domain
SMARTSM007171.6E-1666114IPR001005SANT/Myb domain
PfamPF002493.6E-1567112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2669116IPR009057Homeodomain-like
CDDcd001672.55E-1271112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MGRAPCCSKV GLHRGPWTPR EDALLTKYIQ AHGEGQWRSL PKRAGLLRCG KSCRLRWMNY  60
LRPDIKRGNI SPEEDDLIIR MHSLLGNRWS LIAGRLPGRT DNEIKNYWNT HLSKKLRNQG  120
TDPKTHHKLT VPPEKKKGKK KNKQKNETKK GSSEKTLVYL PKAVRVKALS CVPRTESTFT  180
LDSNSGSAST SQEKVQSPEE EAREVNMVWG VGSDGDNGEV GIFFGEDHDL VYSSSYVESH  240
SDNVHTDHGT LEKLYEEYLQ LLKDEEKPAD ELDSFAQSLL V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-25121165108B-MYB
1h8a_C1e-251211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.006G114800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007147330.10.0hypothetical protein PHAVU_006G114800g
TrEMBLV7BMW20.0V7BMW2_PHAVU; Uncharacterized protein
STRINGXP_007147330.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.11e-68myb domain protein 5