PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.006G116000.1
Common NamePHAVU_006G116000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family HD-ZIP
Protein Properties Length: 235aa    MW: 26838 Da    PI: 6.7797
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.006G116000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.93.6e-182175256
                        T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                        +++ +f++ q++ Le++Fe ++ +  +++ e A++lgL+ rqV +WFqN+Ra++k
  Phvul.006G116000.1 21 KNKKRFSDGQVKSLESMFETDSRLEPAKKLEVARELGLQPRQVAIWFQNKRARWK 75
                        67789*************************************************9 PP
2HD-ZIP_I/II113.11.7e-3622112292
         HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                         +k+r+s+ qvk+LE++Fe++++Lep +K e+areLglqprqva+WFqn+RAR+k+kq+ +dy+ L+++y++l ++ ++L+k+ +++  +l+
  Phvul.006G116000.1  22 NKKRFSDGQVKSLESMFETDSRLEPAKKLEVARELGLQPRQVAIWFQNKRARWKLKQIQRDYTILRANYKTLDSQFHALNKDYQSMLIQLQ 112
                         79*********************************************************************************99988877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.13E-18678IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.4E-19875IPR009057Homeodomain-like
PROSITE profilePS5007117.5721777IPR001356Homeobox domain
SMARTSM003892.1E-161981IPR001356Homeobox domain
PfamPF000461.5E-152175IPR001356Homeobox domain
CDDcd000861.20E-132678No hitNo description
PRINTSPR000311.3E-54857IPR000047Helix-turn-helix motif
PROSITE patternPS0002705275IPR017970Homeobox, conserved site
PRINTSPR000311.3E-55773IPR000047Helix-turn-helix motif
PfamPF021832.0E-977119IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MSDLMEYSHS SNAGTRKKRS KNKKRFSDGQ VKSLESMFET DSRLEPAKKL EVARELGLQP  60
RQVAIWFQNK RARWKLKQIQ RDYTILRANY KTLDSQFHAL NKDYQSMLIQ LQNMKNRLQK  120
PLEQTESCST GYKAANSMES EAGNGEAIKR EQEIKQPSST TGRSEDIVCG GISECDSSIK  180
AKQNFGVEDE PSLLNFVENT DGSLTTSEHW GLLESEDILG QLSSCDYQWW DFWS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11723KRSKNKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.006G116000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150381e-132AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007147343.11e-175hypothetical protein PHAVU_006G116000g
TrEMBLV7BN121e-174V7BN12_PHAVU; Uncharacterized protein
STRINGXP_007147343.11e-174(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56353452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.13e-50homeobox 7