PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.006G119100.1
Common NamePHAVU_006G119100g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family WRKY
Protein Properties Length: 352aa    MW: 38564.3 Da    PI: 6.1513
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.006G119100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.71.2e-33188246159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK vk+s++prsYYrCt+agC vkk+vers++dp++v++tYeg+H+h+
  Phvul.006G119100.1 188 LDDGYKWRKYGQKAVKNSPYPRSYYRCTTAGCGVKKRVERSSDDPSIVVTTYEGQHTHP 246
                         59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-35173248IPR003657WRKY domain
SuperFamilySSF1182903.92E-30180248IPR003657WRKY domain
PROSITE profilePS5081133.006183248IPR003657WRKY domain
SMARTSM007743.0E-40188247IPR003657WRKY domain
PfamPF031061.1E-27189246IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MAEEKREEEP HPNSEPSTTM AFSDEIPNNF TFPFQPPTIF DVMPPPSLSS SCDHKASPFG  60
FLELLGVHDY NAPLFDWLPA AAPSRVGSKV PDFSEVLNTP ASPNLSSISS SSNEATTTAT  120
TTTAEQSGKG GIEHEEGEAE EEEEGGNGGR DDQDQDKTKK QLKPKKKNQK KQREPRFAFM  180
TKSEVDHLDD GYKWRKYGQK AVKNSPYPRS YYRCTTAGCG VKKRVERSSD DPSIVVTTYE  240
GQHTHPCPAS SRAGFGFVNE PGGLGHSGTF GSSHFVLPHQ HQHQPQASAL VYNSNPLFVN  300
SGSNFMNTTS FGGFGQDHAN RRGFGHEALS RDNGLLQDII VPSQVRKEEK D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-30178249778Probable WRKY transcription factor 4
2lex_A2e-30178249778Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.006G119100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007147378.10.0hypothetical protein PHAVU_006G119100g
SwissprotQ9FGZ46e-56WRK48_ARATH; Probable WRKY transcription factor 48
TrEMBLV7BN470.0V7BN47_PHAVU; Uncharacterized protein
STRINGXP_007147378.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100234114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49520.19e-54WRKY DNA-binding protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]