PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.006G123000.1
Common NamePHAVU_006G123000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family WRKY
Protein Properties Length: 496aa    MW: 53554.8 Da    PI: 6.3234
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.006G123000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.68.4e-31264322259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  Phvul.006G123000.1 264 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 322
                         699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.0E-31258324IPR003657WRKY domain
PROSITE profilePS5081132.925258324IPR003657WRKY domain
SuperFamilySSF1182903.79E-26261324IPR003657WRKY domain
SMARTSM007741.4E-37263323IPR003657WRKY domain
PfamPF031061.1E-25265322IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MCSCIFGPIS MDNYQGDLTD IVRASGGAYG GGSSSSCSTG TSSAELPTTS HHHTIITHNH  60
NLSRNDHWHQ HFSSSSSSSS DPITFSSVLQ DPRGLTNFGD PFSTMRDPFL QELGMPSASA  120
YFTGGLEEAA ASFGAAAVTT NANTSATVFA AHKILEEHDM RRPCKNIFSN MIQISPNAKL  180
PVSPYDSTTP MAPSPRPIKP PAVVSPNMVN ANSSKDCLVD TTGVQISSPR NPGLKRRKNQ  240
AKKVVCIPAP AAANSRQTGE VVPSDLWAWR KYGQKPIKGS PYPRGYYRCS SSKGCSARKQ  300
VERSRTDPNM LVITYTSEHN HPWPTQRNAL AGSTRSQPSK NNAGNSKSSE GSNPQKSTTA  360
KAKDDQQQES NTSEGNVSPV VAGNSSANSA SVKEENMEDI EKQFEMDEGE FSDGLPYKPC  420
LMDQSNNQSE DFFAELGEIE ADPLDLLFTQ GFGAAGDQRE ESKALDPFHL FDWSGDNNTN  480
TNTSSFEEPN TKRRS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B5e-25238325280Disease resistance protein RRS1
5w3x_D5e-25238325280Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00171DAPTransfer from AT1G30650Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.006G123000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007147420.10.0hypothetical protein PHAVU_006G123000g
TrEMBLV7BN460.0V7BN46_PHAVU; Uncharacterized protein
STRINGXP_007147420.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54303454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30650.13e-87WRKY DNA-binding protein 14