PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.006G139200.1
Common NamePHAVU_006G139200g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family Trihelix
Protein Properties Length: 330aa    MW: 37809.3 Da    PI: 6.4518
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.006G139200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix93.12.9e-29218302186
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         rW++ ev+ Li++r+++e+++r   +k+  Wee+s++m+  g++rs+k+Ckekwen+nk+yk++  + kkr  ++s++cpyfd+l+
  Phvul.006G139200.1 218 RWPDVEVQSLITVRTSLEHKFRFMGSKGSIWEEISEAMHGLGYNRSAKKCKEKWENINKYYKRTIGSGKKR-RQNSKSCPYFDELD 302
                         8****************************************************************999998.788889******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.526211275IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.3E-4213274IPR009057Homeodomain-like
CDDcd122034.28E-25217281No hitNo description
PfamPF138372.3E-21217302No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MDLFAADHFP IPDHVAPFPD SGDLLFPPDP LSHRHNPQKL RPIRSLPSAL NAHPRPPDPI  60
ASGSGHTPSH ESDSALDAEE EDEDDDNSSA STEGNGPRKR RRKTVRKLEG FVKDLVTKVM  120
EKQEQMHKQL VEIIENKERE RIKREEAWKN EEMERIRKEE EARAQEKSRN LALISFIQNL  180
LGHEIQIPQP VEACNKREEN EVEVNAQKEF NGDPSKSRWP DVEVQSLITV RTSLEHKFRF  240
MGSKGSIWEE ISEAMHGLGY NRSAKKCKEK WENINKYYKR TIGSGKKRRQ NSKSCPYFDE  300
LDILYRNGLL SIGNALSNTT DAPQIEEKE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
197101RKRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00552DAPTransfer from AT5G47660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.006G139200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007147613.10.0hypothetical protein PHAVU_006G139200g
TrEMBLV7BNQ30.0V7BNQ3_PHAVU; Uncharacterized protein
STRINGXP_007147613.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111123338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47660.11e-39Trihelix family protein