PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.006G152500.1
Common NamePHAVU_006G152500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family NF-YC
Protein Properties Length: 241aa    MW: 26332.6 Da    PI: 5.6347
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.006G152500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC129.11.5e-4064164298
               NF-YC   2 lksfwekq...iekatdfk.nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdi 88 
                         +k+fw++q   ie+ td++ + ++Pl+rikki+k+d+dvk +sae+Pvl+skacelfi+elt+++w +ae+n+r  ++k+dia+a++ t++
  Phvul.006G152500.1  64 VKNFWAQQlkrIEEGTDLRsRPSMPLSRIKKIMKSDPDVKLVSAETPVLFSKACELFIMELTMKAWANAENNSRGKIQKTDIASAIAGTEV 154
                         79*****9999999****95679******************************************************************** PP

               NF-YC  89 fdflvdivpr 98 
                         fdfl divp 
  Phvul.006G152500.1 155 FDFLDDIVPI 164
                         ********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.77E-2482178IPR009072Histone-fold
PfamPF008081.7E-1686149IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.102.0E-3187163IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MDQNRNGEPG RGIGSAPAQE AHNKNQYESN PVMSPTTNPP VQTVGPSVPL NRQQQQQEQL  60
QEKVKNFWAQ QLKRIEEGTD LRSRPSMPLS RIKKIMKSDP DVKLVSAETP VLFSKACELF  120
IMELTMKAWA NAENNSRGKI QKTDIASAIA GTEVFDFLDD IVPIPKNDTN TMMHQMLAGN  180
APPPTDHVPP QQVASPPFQS AASATLHQVP HALQTYPLIP TSTVPPNQQD PSPDSDDGTN  240
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B5e-3471163394NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.006G152500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007147757.11e-177hypothetical protein PHAVU_006G152500g
TrEMBLV7BT481e-176V7BT48_PHAVU; Uncharacterized protein
STRINGXP_007147757.11e-177(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2069625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.24e-39nuclear factor Y, subunit C2