PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.006G184000.1

Common Name

PHAVU_006G184000g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

Dof

Protein Properties

Length: 346aa MW: 37332.6 Da PI: 8.4721

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.006G184000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.3	2e-39	54	112	3	61
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++lkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+ Phvul.006G184000.1 54 QQSLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRL 112 7899*****************************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	9.7E-34	55	111	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	4.0E-27	56	111	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.525	57	111	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	59	95	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
MSGNCEKMVV IPPTTNQWPQ VDDEKVLMGS FSGSKNSKVM EKADQEVLQQ QLQQQSLKCP 60 RCDSSNTKFC YYNNYSLSQP RHFCKACKRY WTRGGTLRNV PVGGGCRKNK RLKRPITISS 120 SAAIETASSS NSSALTAASQ PQIDTASTSL FYGLPSSSTD VNLPLVPRFG SRISTSRFDL 180 QLNNALGLGF SSNEASENNS FRNGFGSNNA LLSSYNSIFG SSSSSTSTTP AMSSLLSSTF 240 LQHKFIGCGL KDGVDSNTFQ HGLGLTPLEQ LQMSSDNSEA GMVALKDVKV ELGQNNRLEW 300 NGACQNQIQH VGMYDPSLYW NNSATALGVW SDQAANIGSS VTSLI*

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

MSGNCEKMVV IPPTTNQWPQ VDDEKVLMGS FSGSKNSKVM EKADQEVLQQ QLQQQSLKCP  60
RCDSSNTKFC YYNNYSLSQP RHFCKACKRY WTRGGTLRNV PVGGGCRKNK RLKRPITISS  120
SAAIETASSS NSSALTAASQ PQIDTASTSL FYGLPSSSTD VNLPLVPRFG SRISTSRFDL  180
QLNNALGLGF SSNEASENNS FRNGFGSNNA LLSSYNSIFG SSSSSTSTTP AMSSLLSSTF  240
LQHKFIGCGL KDGVDSNTFQ HGLGLTPLEQ LQMSSDNSEA GMVALKDVKV ELGQNNRLEW  300
NGACQNQIQH VGMYDPSLYW NNSATALGVW SDQAANIGSS VTSLI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.006G184000.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015038	0.0	AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007148145.1	0.0	hypothetical protein PHAVU_006G184000g
TrEMBL	V7BQA0	0.0	V7BQA0_PHAVU; Uncharacterized protein
STRING	XP_007148145.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4522	33	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28310.1	3e-37	Dof family protein

Link Out ? help Back to Top
Phytozome	Phvul.006G184000.1
Entrez Gene	18629210