PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.006G184100.1

Common Name

PHAVU_006G184100g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

Dof

Protein Properties

Length: 298aa MW: 32201.5 Da PI: 9.3566

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.006G184100.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122	2.1e-38	35	95	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++ +kcprCds ntkfCyynnyslsqPryfCk+CrryWt+GG+lrnvPvGgg+rk k+++ Phvul.006G184100.1 35 PQQPQKCPRCDSLNTKFCYYNNYSLSQPRYFCKTCRRYWTQGGTLRNVPVGGGCRKGKRAK 95 67899***************************************************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	4.8E-33	37	93	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.835	39	93	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	1.0E-24	40	93	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	41	77	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MEQGGGEGGD MKKLPQDSRM KEMQQGEAQA QVQAPQQPQK CPRCDSLNTK FCYYNNYSLS 60 QPRYFCKTCR RYWTQGGTLR NVPVGGGCRK GKRAKNSNPS SSDNSSSRSL PQQQQQSQDV 120 VVQTQPPPLT TAMRAKDPSS VLASPFYQSG GYLSSLAAMH SLNPSSHPFD QSLNTDALRS 180 SNLGLLSGFN VQRPTGSIGT IRPPQLYQRE MVSLYDQSTM ANTNSNSSGV SHHDWPHSFI 240 NNNTNASNRA SDASLWSTIS TTIGGNSERT SAAAATVSGS SLVQNQWPDI PGYGPPP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.006G184100.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015038	0.0	AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007148146.1	0.0	hypothetical protein PHAVU_006G184100g
TrEMBL	V7BSZ2	0.0	V7BSZ2_PHAVU; Uncharacterized protein
STRING	XP_007148146.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4145	32	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	2e-32	TARGET OF MONOPTEROS 6

Link Out ? help Back to Top
Phytozome	Phvul.006G184100.1
Entrez Gene	18629211