PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.006G188300.1

Common Name

PHAVU_006G188300g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

Dof

Protein Properties

Length: 281aa MW: 31113.5 Da PI: 8.0423

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.006G188300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	113	1.4e-35	43	102	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++ l+cprCds ntkfCyynny+ sqPr+fC+aC+r+WtkGG+lrnvPvGggr++++ + Phvul.006G188300.1 43 PSEPLNCPRCDSINTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGGRKNKRVK 102 67889***********************************************97766544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-18	44	91	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.6E-31	46	99	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.214	47	101	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	49	85	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MGLSSKQVSN RGLDWDQNLL QAQNLELPKP TPMRKQQQQQ TQPSEPLNCP RCDSINTKFC 60 YYNNYNKSQP RHFCRACKRH WTKGGTLRNV PVGGGRKNKR VKKSTSATTT TSNGSNMDGE 120 LTTHLTIPPL AVDDHKTTPS PLYRSLCLPQ QNLTSTKVSE GRDFAIGNGI FLSSTLPLPQ 180 NQNLLFPFTT SNSFDTNTCA VSNSLQSSSV YNYGEEFKIL EEPTVNSTIP SSGGGNRTQP 240 WEIAATSSGL EMSNYWSWED IDSLVSTDPN NPWDDSDIKP *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.006G188300.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015038	0.0	AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007148198.1	0.0	hypothetical protein PHAVU_006G188300g
TrEMBL	V7BQC5	0.0	V7BQC5_PHAVU; Uncharacterized protein
STRING	XP_007148198.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5107	33	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	3e-24	DOF zinc finger protein 1

Link Out ? help Back to Top
Phytozome	Phvul.006G188300.1
Entrez Gene	18629254