PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.006G195500.1
Common NamePHAVU_006G195500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 214aa    MW: 24680.1 Da    PI: 4.6486
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.006G195500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH309.2e-104691555
                        HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                        + e ErrRR+++ s++  Lr ++P       + ++Ka+i e A+ YI +Lq
  Phvul.006G195500.1 46 NLETERRRREKLSSRLLMLRAIVPII-----TNMNKATIIEDAITYIEKLQ 91
                        5689*********************6.....58*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.106.5E-1541110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.67E-1641107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.6814190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.27E-94395No hitNo description
PfamPF000103.6E-74591IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-104796IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048658Biological Processanther wall tapetum development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MEYEDEDWLC VTMEEFSLAT ENGCTKQGIG RKRNYDDDTR EFKSKNLETE RRRREKLSSR  60
LLMLRAIVPI ITNMNKATII EDAITYIEKL QDKVQSLSQE LHQMEATSEE TAEAKIDEID  120
AAQDMKNLGI QEEVRVAQID GNKLWVKIII EKKRGRFRKL MEALNNFSIE LIDTNLTTTK  180
GAFLITSCIQ DRDGEKLEIQ QTKDLLQDII NGM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14954ERRRRE
25055RRRREK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00091SELEXTransfer from AT4G21330Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.006G195500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150383e-85AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007148286.11e-154hypothetical protein PHAVU_006G195500g
TrEMBLV7BTB21e-152V7BTB2_PHAVU; Uncharacterized protein
STRINGXP_007148286.11e-153(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55102948
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21330.12e-35bHLH family protein