PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.006G196300.1
Common NamePHAVU_006G196300g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family GeBP
Protein Properties Length: 427aa    MW: 46419.5 Da    PI: 5.9834
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.006G196300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573103.12.4e-32177276198
              DUF573   1 klfqrlwseeDeivlLqGlidfkaktgkspsd..didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkif 89 
                         k+fqrlwse+Dei++L+Gl df++ktg +p +    +af+ f+kks++++v+++ql eK rrLKkK+++   + +  +  +fsk+hdq +f
  Phvul.006G196300.1 177 KKFQRLWSEDDEIAILKGLADFTSKTGHDPLKfeGGNAFHAFLKKSLHVEVTSNQLKEKARRLKKKYETAAVRGNGADGLTFSKPHDQRTF 267
                         68**************************77655499******************************************************* PP

              DUF573  90 elskkiWgs 98 
                         elskk+Wgs
  Phvul.006G196300.1 268 ELSKKVWGS 276
                         *******95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045047.7E-32179275IPR007592Protein of unknown function DUF573
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0005829Cellular Componentcytosol
GO:0009507Cellular Componentchloroplast
GO:0016592Cellular Componentmediator complex
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MAQKQKRPSP LDEPPTASSS DSEEEETQKP SSLRHGEEEE EEASSGEEEE ESSGEEAEDD  60
DLPPPITKTN PPPPPTNPHP QPSSSDSETA SESETESETE STPAKAVKPL ASKPMDQAPK  120
LKALPSPAPP KPPLKRAAEN INSNVAKKKK KSGDSSSSAA ASDEEMEDGK KSGDQMKKFQ  180
RLWSEDDEIA ILKGLADFTS KTGHDPLKFE GGNAFHAFLK KSLHVEVTSN QLKEKARRLK  240
KKYETAAVRG NGADGLTFSK PHDQRTFELS KKVWGSEIDG AVANGAVEKP KANGNAAKSP  300
KKKETGSRNV SSAKKTKPEP KPEVVPGPRF DLNESEKTQS NQKPVSCEVS MFLHAVSRFK  360
EGLGVFGLDE GDVTRGLELI GESKRAELRA KWKKLQRTEL ELFANRSELI GEQTKLIVEA  420
LRSSNH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.006G196300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007148295.10.0hypothetical protein PHAVU_006G196300g
TrEMBLV7BQP80.0V7BQP8_PHAVU; Uncharacterized protein
STRINGXP_007148295.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18313490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25210.12e-28DNA-binding storekeeper protein-related transcriptional regulator