PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.006G198400.1
Common NamePHAVU_006G198400g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 347aa    MW: 38954.2 Da    PI: 7.8837
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.006G198400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.42.5e-13171218355
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         + h ++Er+RR+++N++f  L  l+P +     kK++Ka++L + ++Y+k+Lq
  Phvul.006G198400.1 171 QDHIIAERKRREKLNQRFIALSALVPGL-----KKMDKASVLGESIKYMKQLQ 218
                         5799************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.507168217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-19172230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-17172233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.3E-11172218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.69E-12173222No hitNo description
SMARTSM003534.5E-15174223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MRSFNMEISS IRGLPQLGIM EDPNFLHQWQ LNPADTTSLT GAAFGESLQK LSFSGNSNFN  60
LKTTMETSPN GNERPTKQLR NNSWNSNKSQ QQTPDTQYAS CSNLLSFVNS NYSNELGLGK  120
PKVEMVCPEI DNSNLAEMLI SQGTLGNQNY HFKASQEAKK IETRPKLSQP QDHIIAERKR  180
REKLNQRFIA LSALVPGLKK MDKASVLGES IKYMKQLQEK VSTLEEEQNR KRTVESVVTV  240
KKYQLSSDAE DSSSSETGGT LDEVLPEIEA RICERNVLIR IHCEKNKGII EKTISEIEKL  300
HLKVTNSSAL SFGSFILDIT IIAQMDMEFC MTVKDLVRSL RSAFSY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-15169228564Transcription factor MYC2
5gnj_B3e-15169228564Transcription factor MYC2
5gnj_E3e-15169228564Transcription factor MYC2
5gnj_F3e-15169228564Transcription factor MYC2
5gnj_G3e-15169228564Transcription factor MYC2
5gnj_I3e-15169228564Transcription factor MYC2
5gnj_M3e-15169228564Transcription factor MYC2
5gnj_N3e-15169228564Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1176181ERKRRE
2177182RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.006G198400.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0697380.0AF069738.1 Glycine max symbiotic ammonium transporter (SAT1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007148316.10.0hypothetical protein PHAVU_006G198400g
SwissprotQ9T0721e-58BH025_ARATH; Transcription factor bHLH25
TrEMBLV7BTE10.0V7BTE1_PHAVU; Uncharacterized protein
STRINGXP_007148316.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-55bHLH family protein