PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.006G202300.1
Common NamePHAVU_006G202300g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MIKC_MADS
Protein Properties Length: 209aa    MW: 23812.2 Da    PI: 9.7286
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.006G202300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF81.94.1e-261161151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        k+ien   rqvtfskRr+g++KKA+ELS+LCda++a+i++s t kl+ey++
  Phvul.006G202300.1 11 KKIENINARQVTFSKRRKGLFKKAQELSTLCDAQIALIVISATSKLFEYAT 61
                        68***********************************************86 PP
2K-box38.93.7e-1478171598
               K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                         +g++ +++ ++  ++ ++ L kei    +e+ +l G++L+ L+++eL++Le+ L +  ++i + K+e ++++i+ l+ ke el een++L+
  Phvul.006G202300.1  78 QGSDISSTAQQLGSESFDMLHKEIVDKTHELSRLNGKELQGLTIQELHKLEELLLRRWTTISKIKDEKITQEINSLKTKEAELTEENQKLK 168
                         5566777777888889999999999999*************************************************************** PP

               K-box  96 kkl 98 
                         +kl
  Phvul.006G202300.1 169 QKL 171
                         *97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006627.964363IPR002100Transcription factor, MADS-box
SMARTSM004321.4E-35362IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.93E-29377IPR002100Transcription factor, MADS-box
CDDcd002653.66E-35480No hitNo description
PROSITE patternPS003500559IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-23525IPR002100Transcription factor, MADS-box
PfamPF003194.1E-241259IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-232540IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-234061IPR002100Transcription factor, MADS-box
PfamPF014864.0E-1186171IPR002487Transcription factor, K-box
PROSITE profilePS512979.80387177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MIMARRKIAM KKIENINARQ VTFSKRRKGL FKKAQELSTL CDAQIALIVI SATSKLFEYA  60
TSSMQQIFER RNRHSGVQGS DISSTAQQLG SESFDMLHKE IVDKTHELSR LNGKELQGLT  120
IQELHKLEEL LLRRWTTISK IKDEKITQEI NSLKTKEAEL TEENQKLKQK LVPEQRQCYE  180
SITSSSSDFP PDNGPSDTSL NLGLRLFE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-17382184MEF2C
5f28_B1e-17382184MEF2C
5f28_C1e-17382184MEF2C
5f28_D1e-17382184MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.006G202300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007148367.11e-151hypothetical protein PHAVU_006G202300g
SwissprotQ9FUY64e-51JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBLV7BUW21e-150V7BUW2_PHAVU; Uncharacterized protein
STRINGXP_007148367.11e-151(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89033106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.11e-46MIKC_MADS family protein
Publications ? help Back to Top
  1. Nakano T,Kato H,Shima Y,Ito Y
    Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities.
    Plant Cell Physiol., 2015. 56(6): p. 1097-106
    [PMID:25746985]