PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.006G206400.1
Common NamePHAVU_006G206400g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family CAMTA
Protein Properties Length: 1077aa    MW: 121666 Da    PI: 6.1646
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.006G206400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1181.69.2e-57221364118
                CG-1   4 ekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptf 94 
                          ++rwl++ ei++iL n++ +++t+e+++rp+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLKvg+v+vl+cyYah+e+n++f
  Phvul.006G206400.1  22 AQHRWLRPAEICEILRNYRMFQITSEPHNRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGEDNENF 112
                         49***************************************************************************************** PP

                CG-1  95 qrrcywlLeeelekivlvhylevk 118
                         qrr+yw+Le ++ +iv+vhylevk
  Phvul.006G206400.1 113 QRRSYWMLEPDMMHIVFVHYLEVK 136
                         *********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143782.62115141IPR005559CG-1 DNA-binding domain
SMARTSM010765.3E-8218136IPR005559CG-1 DNA-binding domain
PfamPF038591.2E-5021135IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.101.4E-4482573IPR013783Immunoglobulin-like fold
PfamPF018331.9E-5486561IPR002909IPT domain
SuperFamilySSF812961.87E-15486571IPR014756Immunoglobulin E-set
PROSITE profilePS5029718.537657780IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.55E-18665780IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.209.2E-18670781IPR020683Ankyrin repeat-containing domain
CDDcd002041.83E-13675778No hitNo description
PROSITE profilePS500888.656686718IPR002110Ankyrin repeat
SMARTSM002482300686715IPR002110Ankyrin repeat
PROSITE profilePS500889.992719751IPR002110Ankyrin repeat
SMARTSM002480.036719748IPR002110Ankyrin repeat
SuperFamilySSF525401.51E-7884945IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.14894916IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.206895924IPR000048IQ motif, EF-hand binding site
PfamPF006120.0016897915IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0034917939IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.285918942IPR000048IQ motif, EF-hand binding site
PfamPF006122.3E-4920939IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1077 aa     Download sequence    Send to blast
MAEGAAYGLR RPLDIQQLQF EAQHRWLRPA EICEILRNYR MFQITSEPHN RPPSGSLFLF  60
DRKVLRYFRK DGHNWRKKKD GKTVKEAHEK LKVGSVDVLH CYYAHGEDNE NFQRRSYWML  120
EPDMMHIVFV HYLEVKGNKN IVVNTEGEDS QKVTSLSTDS VSPSSSLMSL REDADSEDIH  180
QISSGLRPLH ESRHMGNGPL TEKIDGGVNS SYHMHSFSGD HGQSSISGTD YIPVVHEDKF  240
RGNDTTYFDG EKTHGVAPWD TVLESTANLH NDPSLASFSS MPSSSMGSVL EQEHTIFGDL  300
LSGKRVLTVE AESSHSFQSS WQIPFEDSSG NMPMSTLTPQ SFGLQFGSDY GTSSLGYETR  360
NTSSEIAPIL YSFNGDPKEQ LMQKNYPQEH ADGQSQHSLK SNSAIKVSDE ESVNYSSNVK  420
RTLLDKDESL KKVDSFSRWV TKELGEVADL NMQSTPGISW STDECQHVID DSSLSPSLSQ  480
DQLFSINDFS PKWAYAELNI EVLIIGSFFK SQSEVTTCNW SCMFGEVEVP AEVLADGILC  540
CQAPRHKVGR VPFYVTCSNR LACSEVREFD FRKDFARNVD FAEFFGSSTE MQLHSRLENF  600
LTLKPVNPSN HSFEGDMEKR NLIFKLISLR EEEEYSIKDE PTTELDISKH GVREHLFHRQ  660
IKEKLYSWLL HKVTESGKGP NVLDKDGQGV IHLAAVLGYD WAINPIISSG VNINFRDVNG  720
WAALHWAAFC GRERTVAFLV SMGADCGART DPSPAFLSGR EAADLASENG HKGISGFLAE  780
CSLTHRLETI TMDDQKGGRQ EISGMKGVQT VSERTATPVL CGDMPDTLCL KDSLIAVRNA  840
TQAADRIHQV FRMQSFQRKQ LTQYEGDDEL GLLDQQALSL LASRACKSGQ RNGLANAAAI  900
HIQKKFRGWK KRKEFLMIRQ RIVKIQAHVR GHQVRKQYKP IIWSVGILEK IILRWRRKGS  960
GLRGFRPDTL NKVPSQHNDS PREDEDEDDY DFLKEGRKQK EENIKKALSR VKSMAQYPEA  1020
RAQYRRLLNV VEDFRQPKGT NEDLTSSEEG MVDGVEDWID IDMLLDDDNF IPIAFN*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25627216, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.006G206400.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:25627216}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007148412.10.0hypothetical protein PHAVU_006G206400g
SwissprotQ6NPP40.0CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBLV7BV090.0V7BV09_PHAVU; Uncharacterized protein
STRINGXP_007148412.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF74062642
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]