PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.006G212400.1
Common NamePHAVU_006G212400g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family GATA
Protein Properties Length: 150aa    MW: 17448.5 Da    PI: 6.7212
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.006G212400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA39.38.9e-13127935
                GATA  9 TplWRrgpdgnktLCnaCGlyyrkkgl 35
                        TplWR+gp  ++ LCnaCG +y++kg+
  Phvul.006G212400.1  1 TPLWRNGPAEKPVLCNACGSRYKLKGH 27
                        9*******99999************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF003201.8E-10127IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.104126IPR000679Zinc finger, GATA-type
CDDcd002027.80E-12141No hitNo description
SuperFamilySSF577166.18E-7132No hitNo description
Gene3DG3DSA:3.30.50.109.8E-10127IPR013088Zinc finger, NHR/GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
TPLWRNGPAE KPVLCNACGS RYKLKGHLQN YLPKHHKYYG ELHLNVEDQL SEHNGSSNES  60
SPDLHYVSEQ DFGNIPTRKR SEVVYREMTP LERFEKQLLS LYRSEKQPKE RFPEEDTLVD  120
NVNNFIPTTE IGLGLVLLRQ IRDHSDFHF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.006G212400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150382e-61AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007148481.11e-108hypothetical protein PHAVU_006G212400g, partial
TrEMBLV7BTV11e-107V7BTV1_PHAVU; Uncharacterized protein (Fragment)
STRINGXP_007148481.11e-107(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF127471024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47140.17e-16GATA transcription factor 27