PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.006G217500.1
Common NamePHAVU_006G217500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ZF-HD
Protein Properties Length: 180aa    MW: 20782.5 Da    PI: 10.69
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.006G217500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer681.6e-212172358
         ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58
                        ++ Y+eC +NhA+++Gg ++DGC E+ +++    +++++ Ca CgCHRnFHR++++
  Phvul.006G217500.1 21 QFGYEECCRNHAVAVGGASYDGCNEYQKAR----SQNSFLCACCGCHRNFHRKRPT 72
                        567************************993....457****************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.1E-162370IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015664.5E-162470IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-92469IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152320.532470IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466895.99E-13109171IPR009057Homeodomain-like
PROSITE profilePS500718.584111175IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.0E-20112172IPR009057Homeodomain-like
TIGRFAMsTIGR015651.2E-18114169IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MSSVNTSAYT TQLRASHLEV QFGYEECCRN HAVAVGGASY DGCNEYQKAR SQNSFLCACC  60
GCHRNFHRKR PTLKRERRTE AGNGRALDIV PVSETFRPER SNNPEPLQLV RPLRRRRTRF  120
SRDQKKQMTR FAEILGWKPH KGNREDIQRF CTDMGISRKI FVVWLNNNRH RATPNVSDP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.006G217500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007148543.11e-133hypothetical protein PHAVU_006G217500g
TrEMBLV7BRB51e-132V7BRB5_PHAVU; Uncharacterized protein
STRINGXP_007148543.11e-132(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15282511
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65410.14e-23homeobox protein 25