PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G000400.2
Common NamePHAVU_007G000400g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family Trihelix
Protein Properties Length: 343aa    MW: 38018.7 Da    PI: 7.5083
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G000400.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix92.44.7e-2939133186
            trihelix   1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 
                         rWt+qe+l+Li+++r+ e+++rrg+         + +p+W++vs+++r++g++r+p+qC+++w+nl+++ykki+e+e++ +++s s +++ 
  Phvul.007G000400.2  39 RWTRQEILVLIQGKRDAENKFRRGRtaglplgsgQVEPKWASVSSYCRKHGVNRGPVQCRKRWSNLAGDYKKIREWESQLREDSDSFWVMR 129
                         8**********************97778888888**********************************************99999999999 PP

            trihelix  83 dqle 86 
                         ++l+
  Phvul.007G000400.2 130 NDLR 133
                         9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122036.19E-1438112No hitNo description
PfamPF138374.3E-1339128No hitNo description
PROSITE profilePS500906.56239105IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.607.9E-539104IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MALEQELSLG QSRNPNPVDG VDVRGEGGDE GGKAPRLPRW TRQEILVLIQ GKRDAENKFR  60
RGRTAGLPLG SGQVEPKWAS VSSYCRKHGV NRGPVQCRKR WSNLAGDYKK IREWESQLRE  120
DSDSFWVMRN DLRRDRKLPG FFDKEVYDIL DSGSQAPPPL PLALPSPPSI TVTVCKDMDM  180
DSKRGSAPAP SPAPADPAEP HLYDSNRSVP VEDGLFSDFE QDEFSASPEK KDILPPSNRD  240
FPAPIPLSGV TNEKRRTPNP EMGSSSQGER KRKRLASDGG EESLQIHLID VLERNGKMLS  300
AQLEAQNINF QLDREQRKVH GSNLVAVLDK LADALGRIAD KL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1253273KRRTPNPEMGSSSQGERKRKR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269|PubMed:25770109}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G000400.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007142590.10.0hypothetical protein PHAVU_007G000400g
SwissprotQ8VZ201e-107ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBLV7B9S90.0V7B9S9_PHAVU; Uncharacterized protein
STRINGXP_007142589.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.14e-74Trihelix family protein
Publications ? help Back to Top
  1. Vidal EA, et al.
    Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots.
    BMC Genomics, 2013. 14: p. 701
    [PMID:24119003]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]