PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G002200.1
Common NamePHAVU_007G002200g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 375aa    MW: 40021.8 Da    PI: 8.7349
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G002200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.95.6e-11308353655
                         HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +++Er RR ri  ++ +L++l+P+     +k  s a++L +Av++Ik Lq
  Phvul.007G002200.1 308 SIAERERRTRISGKLKKLQDLVPNM----DKQTSYADMLDLAVQHIKGLQ 353
                         689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.005302352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.11E-15305369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.63E-11306357No hitNo description
Gene3DG3DSA:4.10.280.107.0E-14307365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-8308353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.4E-13308358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MNGDVVEKKV ARDPNGTEPI QLQNADAALK YSTSGIHPPM PSHLSLSKLL IAPSFSNPTK  60
PNLLLLLSSA FSSMYPSSSS SSSSSSSQSM SHAPTGLTRY GSAPGSLLTT TVDALIGGSR  120
PNPTPYYSGG DSPDSTSKDQ TSYHNHALGS ALLRQKSSPA GFLSHLAAAT TNHNHNHTLN  180
GAGFTITRGS RLKSQLSFTG HCQESLCGGD NSNNLVLGDH AGFGMEPWDG SHSHSNSIAF  240
STPPPKRSKN SNSADQDILH CLNALESQFS LPQTTLEMAT VEKLLHIPED SVPCKIRAKR  300
GCATHPRSIA ERERRTRISG KLKKLQDLVP NMDKQTSYAD MLDLAVQHIK GLQTQVQKLH  360
KELENCSCGC AQSK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G002200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-134AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007142611.10.0hypothetical protein PHAVU_007G002200g
SwissprotQ8H1027e-67BH128_ARATH; Transcription factor bHLH128
TrEMBLV7BAJ50.0V7BAJ5_PHAVU; Uncharacterized protein
STRINGXP_007142611.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76803140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.13e-63bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]