PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G003600.1
Common NamePHAVU_007G003600g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bZIP
Protein Properties Length: 445aa    MW: 49112.8 Da    PI: 6.61
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G003600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.11e-09157199345
                         XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                         + k  rr+++NReAAr+sR+RKka++++Le    +L++  ++L
  Phvul.007G003600.1 157 DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 199
                         568899************************9777777666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.7E-8149202No hitNo description
SMARTSM003381.7E-7155218IPR004827Basic-leucine zipper domain
PfamPF077166.3E-7155201IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.415157201IPR004827Basic-leucine zipper domain
CDDcd147082.46E-22159211No hitNo description
SuperFamilySSF579596.88E-7159202No hitNo description
PROSITE patternPS000360162177IPR004827Basic-leucine zipper domain
PfamPF141441.0E-31241316IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MPSFNSQLPN SNACCTEGST VDSFRVSDFD QSVGYRIEDA VALSGNSIFD SLKVSSQTIS  60
RGPVLLGSFD NSPTSLDKSP LTNQTERGSL QFQKFHSSNL VTGDKEHREE FAMADASPRT  120
DISTDADTDD KNPQFDRSHA LVAAASDSSD RSKDKSDQKT LRRLAQNREA ARKSRLRKKA  180
YVQQLESSRL KLTQLEQELQ RARQQGVFIS SSGDQAHSMS GNGAMAFDVE YARWVEEQNR  240
QINELRAAVN SHAGDTELCM IIDGVMAHYD EIFRLKGNAA KADVFHLLSG MWKTPAERCF  300
LWLGGFRSSE LLKLLVNQLE PLTEQQLVGI TNLQQSSQQA EDALSQGMEA LQQSLSETLS  360
TGSLGSSGSS GNVANYMGQM AMAMGKLGTL EGFIKQADNL RQQTLQQIHR ILTTRQSARA  420
LLAIHDYFSR LRALSSLWLA RPRD*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G003600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0933150.0BT093315.1 Soybean clone JCVI-FLGm-24E7 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007142625.10.0hypothetical protein PHAVU_007G003600g
SwissprotQ6IVC20.0TGAL1_ORYSJ; Transcription factor TGAL1
TrEMBLV7B9W00.0V7B9W0_PHAVU; Uncharacterized protein
STRINGXP_007142625.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14703494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-151TGACG motif-binding factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]