PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G011600.1
Common NamePHAVU_007G011600g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family WOX
Protein Properties Length: 277aa    MW: 31196.8 Da    PI: 6.2507
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G011600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox68.67.9e-2295155257
                         T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
            Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                         r+R+t+t+ ql++Le+ F + n +ps+e+++e++++l    +++e++V++WFqNrRa+ k+
  Phvul.007G011600.1  95 RQRWTPTPVQLQILERIFDQgNGTPSKEKIKEITTELgqhgQISETNVYNWFQNRRARSKR 155
                         89*****************99**************************************97 PP
2Wus_type_Homeobox101.56.2e-3394156264
   Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                         +r+RWtPtp Q++iLe+++++G  tP+ke+i++it+eL ++G+i+++NV++WFQNr+aR+++k
  Phvul.007G011600.1  94 SRQRWTPTPVQLQILERIFDQGNGTPSKEKIKEITTELGQHGQISETNVYNWFQNRRARSKRK 156
                         789***********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.0E-1889158IPR009057Homeodomain-like
PROSITE profilePS5007115.25691156IPR001356Homeobox domain
SMARTSM003894.1E-1593160IPR001356Homeobox domain
SuperFamilySSF466893.42E-1994157IPR009057Homeodomain-like
CDDcd000861.36E-1495156No hitNo description
PfamPF000461.3E-1995155IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MVNVVELQNQ LQRWQQSGNN NVNVDANGEL MYVQVMTDEQ LETLRKQIAV YGTICDQLIE  60
MHRTLSAQQD LAGVRLGNLY CDPLMISGGH KITSRQRWTP TPVQLQILER IFDQGNGTPS  120
KEKIKEITTE LGQHGQISET NVYNWFQNRR ARSKRKLQNV APTNTESEVD TEVDSKDKKT  180
KAEEFQSQHI IGPEKLCFQN PQVYSDLQYL NPDSSKPYSI FPSDDSLKST RNLTHVSVFN  240
QVLSNSRSEY AGGKMEVGGT VSYNLIHQTG DCNLGG*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00617PBMTransfer from AT4G35550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G011600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007142723.10.0hypothetical protein PHAVU_007G011600g
SwissprotO817882e-80WOX13_ARATH; WUSCHEL-related homeobox 13
TrEMBLV7BA070.0V7BA07_PHAVU; Uncharacterized protein
STRINGXP_007142723.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18553493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.19e-83WUSCHEL related homeobox 13
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Dolzblasz A, et al.
    Stem Cell Regulation by Arabidopsis WOX Genes.
    Mol Plant, 2016. 9(7): p. 1028-39
    [PMID:27109605]