PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.007G015000.1

Common Name

PHAVU_007G015000g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

TCP

Protein Properties

Length: 253aa MW: 26806 Da PI: 10.5887

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.007G015000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	125.6	5.3e-39	28	120	2	92
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg...k 89 a+kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ ++s s+ a+ns s + Phvul.007G015000.1 28 AVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFS-SVSLSVRAANSASLsspS 117 78*******************************************************************777.222222222111111111 PP TCP 90 aak 92 +a+ Phvul.007G015000.1 118 SAS 120 111 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.3E-33	34	126	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.209	34	88	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MSTSDGTTNG VTNASIIDQQ RHQPQPLAVK KPPSKDRHSK VDGRGRRIRM PIICAARVFQ 60 LTRELGHKSD GQTIEWLLRQ AEPSIIAATG TGTTPASFSS VSLSVRAANS ASLSSPSSAS 120 DHKPQLLAPT PFILGKRIRT DDESSKDDAV SVGPSLVGPS TPSGLWALPT RPDFGQIWSF 180 AAAAPEMVVH PPAVSVSQQQ VSLFAHHQRQ QQQAIGEASA ARVGNYLPGH LNLLASLSGG 240 HGNSGRRDDE HR*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00524	DAP	Transfer from AT5G23280	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.007G015000.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	0.0	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007142764.1	0.0	hypothetical protein PHAVU_007G015000g
Swissprot	Q9FMX2	1e-94	TCP7_ARATH; Transcription factor TCP7
TrEMBL	V7BCY6	0.0	V7BCY6_PHAVU; Uncharacterized protein
STRING	XP_007142764.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5469	31	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	1e-81	TCP family protein

Link Out ? help Back to Top
Phytozome	Phvul.007G015000.1
Entrez Gene	18624557