PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G019400.1
Common NamePHAVU_007G019400g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family B3
Protein Properties Length: 408aa    MW: 47408.1 Da    PI: 8.4614
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G019400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.26.1e-18191286298
                         EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                         f  ++ +++ +++++v+p + +++ ++ +  s  +tl + e+ r W v +  +++s+++ lt+GW++F+k+++Lk gD++vF+ +++s+ +
  Phvul.007G019400.1 191 FVREMFPSYIQRNIMVMPGNIITKEEEHH--SDNVTLWTsEEDRHWLVHFYRNNSSRQINLTSGWNHFAKDHNLKIGDVCVFEKIEKSGIS 279
                         45555666677778*******98876554..445666554999*******66888888*************************88889888 PP

                         .EEEEE- CS
                  B3  92 lvvkvfr 98 
                         ++v+++r
  Phvul.007G019400.1 280 FRVHIYR 286
                         9999987 PP
2B337.64e-123293961590
                         -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                  B3  15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          l +pk f+++hg+ +++  +++  ++  rsW+vkl  + +s    lt GW++F ++ +Lk gD++v++l+++++ 
  Phvul.007G019400.1 329 SLNVPKIFFKNHGIANAT--EVI-LQLGERSWNVKL--DSYS---RLTVGWNDFMRECRLKGGDVCVLELIDKKKI 396
                         5889*****999877444..455.67899*******..9998...4999********************9986544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-9174IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.166174IPR003340B3 DNA binding domain
SMARTSM010190.53174IPR003340B3 DNA binding domain
SuperFamilySSF1019361.04E-11280IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.9E-20182286IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.51E-20184287IPR015300DNA-binding pseudobarrel domain
CDDcd100179.01E-14189286No hitNo description
PROSITE profilePS5086313.521190288IPR003340B3 DNA binding domain
SMARTSM010194.2E-7191288IPR003340B3 DNA binding domain
PfamPF023627.8E-15191286IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.5E-15315402IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.334315406IPR003340B3 DNA binding domain
SMARTSM010192.2E-6318406IPR003340B3 DNA binding domain
CDDcd100174.56E-8327403No hitNo description
SuperFamilySSF1019362.16E-12327401IPR015300DNA-binding pseudobarrel domain
PfamPF023621.3E-8329395IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
SFVSKYWEDM SNPLLLLLPK GGEWKVKWKK IGVDIWLIEN WKKFVEFYSL DQDNLLIFKY  60
VGVSQFEVVI LDQSGLEIFY PLMEAKLDDN GTCSCKFKKA ESSLPGSHFS KKVEANNRRN  120
QPDITPDVEN VRAESQRFKV DFHGTQVETR GRKRKSFSCM KSSNSKEKAI PTESGTALER  180
AKSFQSQNRF FVREMFPSYI QRNIMVMPGN IITKEEEHHS DNVTLWTSEE DRHWLVHFYR  240
NNSSRQINLT SGWNHFAKDH NLKIGDVCVF EKIEKSGISF RVHIYRVDIY NVKQEPSSPK  300
FSDCETTKCN NMTVENHFSV CINDKQLYSL NVPKIFFKNH GIANATEVIL QLGERSWNVK  360
LDSYSRLTVG WNDFMRECRL KGGDVCVLEL IDKKKILFEV SILAFIE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G019400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007142818.10.0hypothetical protein PHAVU_007G019400g, partial
TrEMBLV7BAA50.0V7BAA5_PHAVU; Uncharacterized protein (Fragment)
STRINGXP_007142818.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14649515
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-22B3 family protein