PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G019600.1
Common NamePHAVU_007G019600g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family B3
Protein Properties Length: 265aa    MW: 30753.6 Da    PI: 7.0796
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G019600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.52.2e-17231031197
                         HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                  B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                         ++++rl +pkkf++++g++   s  + l+ ++g +W+v+   +k++g+++++kGWk+Fv+   L+ g fv F++dg+se    v ++
  Phvul.007G019600.1  23 SNLQRLQIPKKFTNRYGEN--LSNPVFLRPPDGTQWKVYW--SKQKGEIWFEKGWKQFVEHYSLDHGYFVFFTFDGTSEI--DVLIV 103
                         4557789*********977..7778***************..*******************************9986544..55555 PP
2B350.73.2e-16172262199
                         EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                         ff+v ++s++l+s rl +p+     + + k  ++k +t     g sW+++l   ++++r  l++GW+ F+++n+L++gD+++F+++ r++ 
  Phvul.007G019600.1 172 FFTVVIRSYNLTSYRLNIPNLEG--YiD-K--RKKYVT-VEVGGVSWSLRL--VGSDRR-RLGGGWRVFAEENDLEAGDVCIFEHIFRNDS 253
                         899****************9875..523.2..333455.5569********..555555.79************************66555 PP

                         ..EEEEE-S CS
                  B3  91 elvvkvfrk 99 
                          ++v++f++
  Phvul.007G019600.1 254 DFRVHIFKS 262
                         569999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.71913106IPR003340B3 DNA binding domain
SuperFamilySSF1019363.14E-2215105IPR015300DNA-binding pseudobarrel domain
CDDcd100171.42E-1615104No hitNo description
SMARTSM010192.3E-1616106IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-2316106IPR015300DNA-binding pseudobarrel domain
PfamPF023622.5E-142297IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.9E-18168262IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.24E-17169261IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.239172263IPR003340B3 DNA binding domain
PfamPF023622.0E-13172262IPR003340B3 DNA binding domain
CDDcd100175.37E-18172261No hitNo description
SMARTSM010193.0E-12172263IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MAAHPPMDHA ILPIRFFKTI LKSNLQRLQI PKKFTNRYGE NLSNPVFLRP PDGTQWKVYW  60
SKQKGEIWFE KGWKQFVEHY SLDHGYFVFF TFDGTSEIDV LIVDQSSLDM QYPSSHSPEQ  120
SESLGHSDDE SFKLLDEGPD SDHHAQGNLS LNWPREARAN ELARKFISCN PFFTVVIRSY  180
NLTSYRLNIP NLEGYIDKRK KYVTVEVGGV SWSLRLVGSD RRRLGGGWRV FAEENDLEAG  240
DVCIFEHIFR NDSDFRVHIF KSQR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G019600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007142820.10.0hypothetical protein PHAVU_007G019600g
TrEMBLV7BAH60.0V7BAH6_PHAVU; Uncharacterized protein
STRINGXP_007142820.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49475.13e-19B3 family protein