PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G022900.1
Common NamePHAVU_007G022900g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family B3
Protein Properties Length: 290aa    MW: 32834.8 Da    PI: 8.7368
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G022900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.82.2e-14261051499
                         T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                  B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                          r+ lp+kf++++gg+   +  ++l+ ++ ++W v+   + k g+++++kGWkeF++   L  g fvvFk++g+s+    v +++k
  Phvul.007G022900.1  26 ERIKLPNKFTNRYGGS--LPNPVSLRASDFKEWVVYW--TEKNGEVWFEKGWKEFAENYSLSYGYFVVFKYSGTSQI--DVLILDK 105
                         4688*********999..5556***************..99999***************************997665..6776665 PP
2B337.34.8e-122182882798
                         ---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                  B3  27 ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                         +++ e+++ l++ ++s+  W vkl    +++r   +++GW+ F+k+ +L++gD+++F+l++  +  l+v+vfr
  Phvul.007G022900.1 218 NMNCEKNVVLQMANRSSYAWYVKL--LSGGDRyDRFSSGWSIFAKESKLEVGDICIFELVEPAGPLLRVHVFR 288
                         44567889999*************..4444442579***********************98866668899987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.30813106IPR003340B3 DNA binding domain
SuperFamilySSF1019361.73E-1814106IPR015300DNA-binding pseudobarrel domain
CDDcd100171.80E-1415104No hitNo description
Gene3DG3DSA:2.40.330.101.7E-1915106IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.6E-816106IPR003340B3 DNA binding domain
PfamPF023621.6E-112698IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.0E-13158288IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.28E-12199288IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.084200289IPR003340B3 DNA binding domain
CDDcd100173.28E-9210288No hitNo description
PfamPF023622.5E-9218288IPR003340B3 DNA binding domain
PROSITE profilePS5086310.25225289IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MASHLGQGSA TIPIHFFKII LETNVERIKL PNKFTNRYGG SLPNPVSLRA SDFKEWVVYW  60
TEKNGEVWFE KGWKEFAENY SLSYGYFVVF KYSGTSQIDV LILDKSALEL DCLSSANASV  120
NPVNATEKEQ NARPVASSMS GNCLNLPRTL KARKISNKFK SKHPYFTLVI EPSNLEENAS  180
VNLNMKSLFD QFIIGIMSFF LTVVCCFTQK YVPKFLDNMN CEKNVVLQMA NRSSYAWYVK  240
LLSGGDRYDR FSSGWSIFAK ESKLEVGDIC IFELVEPAGP LLRVHVFRS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G022900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007142861.10.0hypothetical protein PHAVU_007G022900g
TrEMBLV7BB850.0V7BB85_PHAVU; Uncharacterized protein
STRINGXP_007142861.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.15e-15B3 family protein