PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G041200.2
Common NamePHAVU_007G041200g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 276aa    MW: 30146.4 Da    PI: 8.3857
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G041200.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.50.000571601971254
                         HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         R +++ ++++ L++l+ +      +K + a++L +A+ YI+ L
  Phvul.007G041200.2 160 RKEKLGERIAALQQLVSPF-----GKTDTASVLHEAMGYIRFL 197
                         77788899********998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.80E-5140202No hitNo description
PROSITE profilePS5088810.906148197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-10159210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-7159204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MEPKDEFELH HFTAPTGTTF SQLLFGDDHD HHHHHDHHDA TALPLPQDHS SYNHNNLSRS  60
PLFSFHKPPK MLCFGNHQNQ PHLSLPPTTV TPQKSVITSS DSSSASSSNY TNTGFNSLPK  120
STKKRNGLGQ EPVTKVGVGG QRQTKKTKAE NPTSTGHAKR KEKLGERIAA LQQLVSPFGK  180
TDTASVLHEA MGYIRFLHDQ VQVLCSPYLQ TLSSSDQHQH GDGENNEEEV KKELRSRGLC  240
LIPVGCTVHV ASSNGADFWS PGAIGKKVSP SSSKQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G041200.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0918654e-79BT091865.1 Soybean clone JCVI-FLGm-9A23 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007143068.10.0hypothetical protein PHAVU_007G041200g
TrEMBLV7BAZ70.0V7BAZ7_PHAVU; Uncharacterized protein
STRINGXP_007143069.11e-173(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19500.13e-51bHLH family protein