PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G041900.1
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family B3
Protein Properties Length: 390aa    MW: 44658.4 Da    PI: 9.3561
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G041900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.76.7e-1623108999
                         HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                  B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                          + + g l++pk+f+++hg +   s  + l+ ++g +We+    +k + + ++l+kGWkeFv    L  g  +vFk++++ +    v +f+
  Phvul.007G041900.1  23 TTIQIGKLMIPKEFTRKHGAS--LSNPMFLKLPDGIEWEFSW--TKEGAHnVWLEKGWKEFVTYYSLGHGHLLVFKYQQTCKL--EVNIFD 107
                         4455678***********977..66779**************..6666666*************************9885555..899988 PP

                         S CS
                  B3  99 k 99 
                         +
  Phvul.007G041900.1 108 E 108
                         6 PP
2B350.92.8e-16178267198
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                         f  v++ s+v+   +lv+p  fa+++ +k+    ++ l+ ++gr+W v l  +  +    + kGWk F+++n+L+ gD ++F l+++++  
  Phvul.007G041900.1 178 FMVVMKESYVNGY-LLVIPSIFAKKYLKKEGI-HDVLLRVLDGRTWHVSL--KDEK----FHKGWKYFASDNRLNIGDNCTFDLTESQGLC 260
                         5556666666655.7***********555544.59***************..6666....89*********************98766666 PP

                         .EEEEE- CS
                  B3  92 lvvkvfr 98 
                         ++v+++r
  Phvul.007G041900.1 261 FKVSIIR 267
                         6776665 PP
3B339.11.3e-123123871799
                         E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                  B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                         ++p  f++++ ++    k++++ +  +++We+ l  ++   ++ +++GW++F+k+ +++  D++vF+l++ +++ l v++frk
  Phvul.007G041900.1 312 RVPIAFLRRYLQN----KQVVMLQFGNKTWEIGL--SGA-IQTKMSNGWSQFAKECKVQHEDVCVFELINIKDGVLDVHIFRK 387
                         6899999999534....469**************..444.4567899*********************988**********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.71E-2011109IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.9E-2113110IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.91515109IPR003340B3 DNA binding domain
CDDcd100175.84E-1715107No hitNo description
SMARTSM010192.4E-1516109IPR003340B3 DNA binding domain
PfamPF023621.5E-1323108IPR003340B3 DNA binding domain
SuperFamilySSF1019364.9E-19171268IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.4E-21171268IPR015300DNA-binding pseudobarrel domain
CDDcd100173.56E-17176267No hitNo description
PROSITE profilePS5086312.012177269IPR003340B3 DNA binding domain
PfamPF023624.1E-14178267IPR003340B3 DNA binding domain
SMARTSM010192.8E-12178269IPR003340B3 DNA binding domain
SMARTSM010190.0034300388IPR003340B3 DNA binding domain
CDDcd100171.21E-10302386No hitNo description
SuperFamilySSF1019365.89E-11302387IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-12302387IPR015300DNA-binding pseudobarrel domain
PfamPF023622.6E-10312388IPR003340B3 DNA binding domain
PROSITE profilePS508639.911313388IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MTSNRSGILP PSEIRFFKII VHTTIQIGKL MIPKEFTRKH GASLSNPMFL KLPDGIEWEF  60
SWTKEGAHNV WLEKGWKEFV TYYSLGHGHL LVFKYQQTCK LEVNIFDESG VEINYPSNNT  120
QNHSAENLFE VSPTIPSYPG TSKKQRSRIG VVGESSNLPQ QVCQENSSGA ISSETPSFMV  180
VMKESYVNGY LLVIPSIFAK KYLKKEGIHD VLLRVLDGRT WHVSLKDEKF HKGWKYFASD  240
NRLNIGDNCT FDLTESQGLC FKVSIIRISQ DTTSQGNLSR SFFQITLYYL CKNDCSFLPL  300
NKVMKKYNLM QRVPIAFLRR YLQNKQVVML QFGNKTWEIG LSGAIQTKMS NGWSQFAKEC  360
KVQHEDVCVF ELINIKDGVL DVHIFRKQS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G041900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017413857.11e-154PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X1
TrEMBLA0A0S3SM541e-153A0A0S3SM54_PHAAN; Uncharacterized protein
STRINGXP_007143081.11e-143(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.15e-17B3 family protein