PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G044200.1
Common NamePHAVU_007G044200g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family LBD
Protein Properties Length: 176aa    MW: 19286.2 Da    PI: 8.7863
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G044200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26096.82.2e-302101195
              DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                         +C++C+vlr++C+++C+l+ ++     p++q++++ +v+k+FG++ ++++l+++p ++r+++++sl+yeA  r+ +Pv+Gavg+++++++q
  Phvul.007G044200.1   2 SCNGCRVLRKGCSENCMLRHCLqwienPQAQAHATLFVAKFFGRAALMSFLSSVPANQRSALFQSLLYEAVGRTINPVNGAVGLLWTGNWQ 92 
                         6****************************************************************************************** PP

              DUF260  87 leqlkaela 95 
                         l+q+ +e +
  Phvul.007G044200.1  93 LCQMGVEKV 101
                         ***988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089117.7391107IPR004883Lateral organ boundaries, LOB
PfamPF031957.3E-27299IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSENCMLR HCLQWIENPQ AQAHATLFVA KFFGRAALMS FLSSVPANQR  60
SALFQSLLYE AVGRTINPVN GAVGLLWTGN WQLCQMGVEK VLRGGAELTP LPHFLSSADE  120
HHVTERVMVG GGILCHQAKK QRVGTTSQES ETSYLGRKPQ DCAPQSQRNL LTLFL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G044200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-134AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007143107.11e-128hypothetical protein PHAVU_007G044200g
SwissprotQ9SN237e-61LBD38_ARATH; LOB domain-containing protein 38
TrEMBLV7BF541e-127V7BF54_PHAVU; Uncharacterized protein
STRINGXP_007143107.11e-128(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72134136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.13e-63LOB domain-containing protein 38