PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G044500.1
Common NamePHAVU_007G044500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 268aa    MW: 28895.7 Da    PI: 7.6307
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G044500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.0012104126123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C+ C+k F++   L  H  +H
  Phvul.007G044500.1 104 HRCTVCNKAFPSYQALGGHKASH 126
                         79**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.2E-13104128IPR007087Zinc finger, C2H2
SMARTSM003550.019104126IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.42E-8104176No hitNo description
PROSITE profilePS501579.369104131IPR007087Zinc finger, C2H2
PROSITE patternPS000280106126IPR007087Zinc finger, C2H2
PfamPF139122.7E-13154178IPR007087Zinc finger, C2H2
SMARTSM003550.19154176IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.411154176IPR007087Zinc finger, C2H2
PROSITE patternPS000280156176IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MALEALNSPT AAATPFGAYQ EEEEELELQF REPWSKRKRS KRPRFETEEE YLALCLIMLA  60
QSGNNNNSNS NSNNTNASSR RQTQQSPSPS QSQKEPSPPL KLSHRCTVCN KAFPSYQALG  120
GHKASHRKSS SESTSVSVVA NDTVAASTVG GRMHECSICH KSFPTGQALG GHKRCHYDGG  180
NHHSNAHANN GSAVTSSSDG VAASSHTLRG FDLNLPAPLT EFWSPAGFDF RKKVGGVGEQ  240
EVESPLPVTA AKKARLFSRE DHDDETA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G044500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-159AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007143110.10.0hypothetical protein PHAVU_007G044500g
TrEMBLV7BB960.0V7BB96_PHAVU; Uncharacterized protein
STRINGXP_007143110.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13273291
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19580.23e-33zinc-finger protein 2